Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00412 ATGGAGGTTTTCTCAACTCTGTTTGACTCTGATTATGCTTCTTCGACAAGAAGTGATATTAGCCGGAGGGAGAATTTTTCCGACGAGGAGCCTATTCTGGCGGCGAGCTCTCCGAAGAAGAGAGCCGGAAGGAAGAAGTTTAAGGAGACGAGGCACCCAGTTTTCCGCGGAGTGAGGAGAAGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCGAATAAGCAGGCTAGGATTTGGCTCGGGACGTTTCCGACGGCGGAAATGGCGGGCAGAGCCCATGACGTGGCAGCAATTGCTCTCCGCGGCCGGGCTGCTTGCTTGAACTTTGCAGACTCTGCATGGCGGCTTCCTGTGCCGGCATCAGCGGAGGCAAAGGATATTCAGAAGGCAGCGGCGGAAGCTGCAGAGGCATTCCGACCACGCCCTGAAAATGAGGAGTTGAAGCCCGAACAATTCCCGGGAGAAACGCCGGAGAATGTGTTCTACATGGACGAGGAGGCTGTTTTCGGGATGCCAAGGCTGCTGGCAAACATGGCGGAGGGAATGCTATTGCCGCCGCCACAGGGAGAGGACAGCAGAGCTGATGACGGCGATTTCCATGCTGACGTGTCATTATGGAGTTAC 627 55.5 MEVFSTLFDSDYASSTRSDISRRENFSDEEPILAASSPKKRAGRKKFKETRHPVFRGVRRRNSGKWVCEVREPNKQARIWLGTFPTAEMAGRAHDVAAIALRGRAACLNFADSAWRLPVPASAEAKDIQKAAAEAAEAFRPRPENEELKPEQFPGETPENVFYMDEEAVFGMPRLLANMAEGMLLPPPQGEDSRADDGDFHADVSLWSY 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9705559 9706185 - Bpe024892 Bpe12g00412 112425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00412 209 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 209 IPR045277 GO:0003700
Bpe12g00412 209 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 14 209 - -
Bpe12g00412 209 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 MobiDBLite consensus disorder prediction 138 153 - -
Bpe12g00412 209 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 MobiDBLite consensus disorder prediction 138 158 - -
Bpe12g00412 209 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Bpe12g00412 209 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Bpe12g00412 209 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Bpe12g00412 209 MobiDBLite consensus disorder prediction 1 50 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00954 Bpe12g00412 CCT
Bpe03g00126 Bpe12g00412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00126 Bpe-Chr3:1798623 Bpe12g00412 Bpe-Chr12:9705559 1.56E-77 dispersed
Bpe05g00627 Bpe-Chr5:20182305 Bpe12g00412 Bpe-Chr12:9705559 6.97E-71 dispersed
Bpe07g00955 Bpe-Chr7:15349260 Bpe12g00412 Bpe-Chr12:9705559 2.97E-107 dispersed
Bpe11g00686 Bpe-Chr11:5285809 Bpe12g00412 Bpe-Chr12:9705559 1.25E-55 dispersed
Bpe12g00412 Bpe-Chr12:9705559 Bpe01g00552 Bpe-Chr1:3582125 9.84E-34 dispersed
Bpe12g00412 Bpe-Chr12:9705559 Bpe12g00413 Bpe-Chr12:9713435 5.96E-17 tandem
Bpe12g00412 Bpe-Chr12:9705559 Bpe03g00305 Bpe-Chr3:4389013 6.27E-38 wgd
Bpe12g00412 Bpe-Chr12:9705559 Bpe07g00954 Bpe-Chr7:15344622 2.57E-36 wgd
Bpe12g00412 Bpe-Chr12:9705559 Bpe07g00128 Bpe-Chr7:906679 1.75E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22194 PF00847 AP2 6.50E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00412 - K09286 csv:101220749 265.003