Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00419 AGAGAGAGAGAGAGAGAGATGGGTAATTCATTTGGGTGTTCTGCTTCGGGGGAAAGACTGGTATCGGCTGCAAGAGATGGGGATTTGGTGGAGGCCAAAATGTTATTGGATTTCAACCCTTGCCTGGCCAAGTACTCCACTTTCGGCGGCCTCAATTCTCCTCTCCATTTTGCTGCCGCCAAGGGCCACAATGAGATTGTCGCCCTGTTGCTAGAAAATGGAGCCGAGGTTAATTCCAGAAATTATTGCGGCCAGACAGCTTTGATGCAAGCTTGTCGATACGGACACTGGGAAGTTATACAAACTCTTCTTCTTTTTAGGTGTAATGCTACTAGAGCAGACTACCTGAGTGGCCGGACTGCTCTTCATTTTGCTGCATTAAATGGTCATGTAAGATGCATGAGACTTGTTGTAGCTGATTTCATTCCGAGTGCTCCTTATGAAGCGATAAATGCCAAGATAAACGGCAACAGAGCTGATGACTCAAATTGCAGTGTGTTGTTGAAATTTGTAAATAAGGCAGCCGATGGAGGTATCACCGCTCTTCACATGGCGGCTTTAAACGGGTACTTTGATTGTGTTCAACTCTTGCTTGATCTTCAGGCCAACATTTCGGCTGTGACATTTCATTATGGAACATCAATGGATTTGATTGGTAAGTTCATCCTTAATCTTCGATTTCGTTATTTATTCCTCAAAATCTATCCTTATCGTCAATCCAAACATAATCATGTAGGAGCTGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGTAATTTGAAGTGTTGTCAGGCAAGAATCTGTGCTTCTCGATTGACTTTAAACTGTAACGGATGGCTTCCTTTAGACGTAGCTAGAATGTGGGGCCGCCATTGGCTTGAACCACTTCTACTACCCAATTCCGATTCCTCCTTACCTCCATTTCCCGTGTCTAGATACCTATCGTTGCCTCTCTTGAGCATTCTTAACATCGCAAGAGATTTTGGATACAAGTCTATAACTGCGACAAACGATGATGTGGACGCATGTGCCGTGTGTTTAGAGAGAGTATGCTCTGTAGCAGCCGAAGGATGTAATCACGAACTATGCGTAAGATGCGCATTGTATCTTTGTTCGACGAGTAATTTCTCGTCAGAAATAGTTAATCCACTTGGGTCTATTCCGTGTCCTCTATGTCGACAAGGAATAATCTCATTTGTCAAATTACTATCTTCTCCGGCGAAGGAGAAACAATCCCACCTTTCATTGGCACTCTGTACCCCATGCATGCTTCATAGCCGGGACGCGAAATCTCCTGATCGTACCAGCCCAATCAAGAACAATCACGAGCCATCCGATTCTTCGGAATTATTTTGCCCTCTTACTTGTACCCCATTTCCTTCAGTTACCATTCCGTTATGCACATGCCAAGACGCTCCTTGTTCGTCTTTCGAGCCGCGTGAAATTGAATCACAAAACACATCGACAGCTGAGGATAAATTGGACGGTTCTAGACTCGAAAGAATGAGCTGTTCGAGTATGTTTTGGGGGAGGAGAAGCTGCAGCCGAGAGAATCAGTGCAATTCGGAAATCAACGCTTGA 1584 44.76 REREREMGNSFGCSASGERLVSAARDGDLVEAKMLLDFNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAEVNSRNYCGQTALMQACRYGHWEVIQTLLLFRCNATRADYLSGRTALHFAALNGHVRCMRLVVADFIPSAPYEAINAKINGNRADDSNCSVLLKFVNKAADGGITALHMAALNGYFDCVQLLLDLQANISAVTFHYGTSMDLIGKFILNLRFRYLFLKIYPYRQSKHNHVGAGSTPLHYAACGGNLKCCQARICASRLTLNCNGWLPLDVARMWGRHWLEPLLLPNSDSSLPPFPVSRYLSLPLLSILNIARDFGYKSITATNDDVDACAVCLERVCSVAAEGCNHELCVRCALYLCSTSNFSSEIVNPLGSIPCPLCRQGIISFVKLLSSPAKEKQSHLSLALCTPCMLHSRDAKSPDRTSPIKNNHEPSDSSELFCPLTCTPFPSVTIPLCTCQDAPCSSFEPREIESQNTSTAEDKLDGSRLERMSCSSMFWGRRSCSRENQCNSEINA 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9803376 9806329 + Bpe005675.1 Bpe12g00419 112432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat region circular profile. 50 81 - -
Bpe12g00419 527 PANTHER HOMEOBOX PROTEIN WARIAI 7 220 - -
Bpe12g00419 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 403 IPR013083 -
Bpe12g00419 527 Pfam Ankyrin repeats (many copies) 176 217 IPR002110 GO:0005515
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat region circular profile. 117 138 - -
Bpe12g00419 527 Pfam Ankyrin repeats (many copies) 52 104 IPR002110 GO:0005515
Bpe12g00419 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 7 220 - -
Bpe12g00419 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 242 527 - -
Bpe12g00419 527 SUPERFAMILY Ankyrin repeat 20 300 IPR036770 -
Bpe12g00419 527 Gene3D - 152 305 IPR036770 -
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat profile. 50 82 IPR002110 GO:0005515
Bpe12g00419 527 PANTHER HOMEOBOX PROTEIN WARIAI 242 527 - -
Bpe12g00419 527 SMART ANK_2a 177 206 IPR002110 GO:0005515
Bpe12g00419 527 SMART ANK_2a 83 112 IPR002110 GO:0005515
Bpe12g00419 527 SMART ANK_2a 50 79 IPR002110 GO:0005515
Bpe12g00419 527 SMART ANK_2a 117 147 IPR002110 GO:0005515
Bpe12g00419 527 SMART ANK_2a 247 277 IPR002110 GO:0005515
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Bpe12g00419 527 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Bpe12g00419 527 SUPERFAMILY RING/U-box 340 400 - -
Bpe12g00419 527 ProSiteProfiles Zinc finger RING-type profile. 344 394 IPR001841 -
Bpe12g00419 527 Gene3D - 9 151 IPR036770 -
Bpe12g00419 527 ProSiteProfiles Ankyrin repeat profile. 117 138 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00419 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 796.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00847 Bpe-Chr2:6284542 Bpe12g00419 Bpe-Chr12:9803376 1.53E-27 dispersed
Bpe12g00419 Bpe-Chr12:9803376 Bpe13g01186 Bpe-Chr13:17236118 7.29E-145 dispersed
Bpe12g00419 Bpe-Chr12:9803376 Bpe01g00135 Bpe-Chr1:791067 3.69E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00419 Bpe_Chr12 FPKM 10.677965 8.828608 11.317209 16.242203 11.221693 10.772393 17.337486 17.174189 16.176687 24.459362