Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00427 ATGTTCAAGTCGTGGAGCAAAAAGAACAGGGTCAAAGCTGTATTCAAATTACAGTTCCAGGCAACACAGGTGCCGAAGTTGAAAAAATCAGCTTTGATGATATCTTTTGTACCGGAGGATGCAGGAAAGCCAACAGTGAAGTTGGAGAAAGCTGAAGTGGAGGATGGAACGTGTGTTTGGGAGAATCCTGCGTATGAAACAGTGAAACTGATTAAGGAGCAAAAGACAGGAAAAATGCACGAGAAGATATACCATTTCATTGTTTCGACAAACGGGCACCTAAATAACGGCACAAATGAGAGTGCCAAACAAATTGTTTGTCTTGTAAATAACACTCAACATGTTCCTGGAATCGACAACAATGATGCACAAAATCGCTCCACCTTTTTTTCAACTCTCAGACAAAATTCGATGCCAACGACGGAAAAAAGGGACCATGTTATGACAAAAAATCACACTCATAGGAGATCAAACACCAATTGGTCATTGGGTTCAGTTTCTGATGGAAGCTTTGGAGATTCAACACACAGCTTTGAAGACAACCATTCAAGAGATAGATTGAAAGAGGCTGATGATACGATTGAAAAGGTCAAGAATGAAAATGCTTTGCTGATCAGGCAGCTGGAAGTATCACAAATGGAGTTGCAGTCTCTTCGTAAACAGGTTGCAAAGGAGGTCACTCAAGGACAGAACCTATCCAGACAAGTTATTAGCCTTACGGAGGAGAAAGATGCACTTAAAACGGAATGCAAACAATTCAAATACTTGAAGAAATATAATGACGAGTCTGAAGACACAAAATTATTGCAGTCTGAGATCAACGATACAAGGGTCCAGTTGGAAGTAGTGAGACAAGAGCTTGAGCATGAAAAGAAATTAAGAACCAATTTTGAGTTGCAAGTTCATAAAACACGGGAGTCTAACTCGGAGTTAATTCTTGCAGTCACGGATCTTGAAGAAATGATTGAGCTGAAAGATAGAGTAATTGTTGATCTGAAAAGCAATCTAGAAACATGGAAGAATGCAGAAGAATCACAAGACAAATACAACTGCCAATTGGAAAAGACTGAAAGTAAACAGTATTCGGGAGAGCTGGATAAAGATCAACATGACATCGAGGAACTAGAATTGTTGAAGCAAAAGATTATTGAACTGGAGGTGGAAATACATATCCAAGAGATACAAAGGGGTAAGTTAAAGATGCAGATAGAGCAGCTGACATTGAACAATGAGAGTTTAAAGCAAGAAAATCAAGACATATCTATGAAGTTAGATGAAAATATGGAACATTATGCAATCAAACAAAATGAGCACTCTAATTCATTGGTTCTCGTCAAAGAACTTGAAGAGCAAATAGAAATGTTAGAAGTAAAAATCGAAAGGCAGGCTCATGCATTGTCAAAATCTTTGACAACAATCAATCAACTTCAATTTCAAGTCAAGGATTTGGAGACAGAAATGGAGAAGCAAGCGCAAGGATTTGATGACAATATCAATGCCATGAAATCTGCCAAAATTAAGCAAGAACAGAGGGCCATTAAAGCAGAGGAGGCTTTGAGGAAGACAAGGTGGAAGAATGCAGTTACAGCTGAACGTCTTCAGGAAGAATTTAAGAAAATTTCGGCAGAGATGGCATCCAAGTATGATGACAATGAGAAGATAACAATGAAAGCAGTTACAGAAGCTGATGAATTACGTCATCAAAACAGCATTTTGGAAGAAATGCTCCAGAATGCCAACGAAGAATGCAGGGTAATTAAAGATCAGACTGCAGGAAAATTGCAAGAACTTAGCAGCCAACTAGACATAAAAACAAAGCAAACAGAGGAAATGCTGATAGAGCTAGGCAACAAGTCAAAAGAACTTGAAAACATTCAAAACCATGATAATACAGGGAAGCAGGAAATCCAAAGGCTTCACTCCATGATAGAAAAACTCACTGCAGAAAAACCAGAAAGAGAATTATTTAACTCAGCTGCTGAAAGGGATAATTTGGAGACAGTCAGTGGTTTAGCAAATAAGGAATCAGATATAGCAAATGAGAACCTGGTGAAAATGAAATTTTTAAATGATCAGAAGGATATGACGATTGCGGATTTGCTTTCAGTAGTAGAAGACATTAAAGCTCAATATAATGAGTTAAAAATGGCTACCTGCAAAGAAGATCGAGAGAAAGAAAATTTAAGAAAACAAGTATATCAGTTAAAGGAGGAGCTACTGAAGAAAGAAGAGATAATGACCAGTGCAGAAAAAAACCTCAAACACAAAACTCTAGAAACTGGAGCTTCAGATGTAAACCCGACTTCACTTAATAATGAATCAGAGGCATTTGTTTATAATTCAACAGAGGTTGCGACTTCGCAGAAGACAGTACAATTGCTACAGGAAAAAATACAAATTAAGGAAGCTGCTCTGGAAAACTCAACAACCTCATTTCTAGAAGAGAAAGAGAAACTTCATAGTACAATCGAAGAACTCGAACGAAAGCTGGAACTACTCACTTTCGAAACCTCAGAAAAGGTATTTAATTCTCAATATCGCAAACTATTTCTTCATCAAAATATCGGCTTGTCCAGTTATCTTTTTGTCCGTTTGTATACACTCATCTCAAAACTTTGGGTTTGCAGGAAATGGGAAACCTACTCTGATAAGGAAATTCAACAGCCAATCAGTATCGATAGCAATGAGACCATTCTTAGGGATCTCTACTCTGAAATATCCATGCTAAAAGAAAAGAACATATCTATGGAAAAAGAGCTGAAGGAAATGGAAGAGAGATATTCTGAGGTAAGTCTAAAGTTTGCGGAAGTTGAAGGTGAGAGACAACAACTTGTCATGACAGTACGCAATCTTCAGAATGGTAAGAAGAACTAA 2874 37.72 MFKSWSKKNRVKAVFKLQFQATQVPKLKKSALMISFVPEDAGKPTVKLEKAEVEDGTCVWENPAYETVKLIKEQKTGKMHEKIYHFIVSTNGHLNNGTNESAKQIVCLVNNTQHVPGIDNNDAQNRSTFFSTLRQNSMPTTEKRDHVMTKNHTHRRSNTNWSLGSVSDGSFGDSTHSFEDNHSRDRLKEADDTIEKVKNENALLIRQLEVSQMELQSLRKQVAKEVTQGQNLSRQVISLTEEKDALKTECKQFKYLKKYNDESEDTKLLQSEINDTRVQLEVVRQELEHEKKLRTNFELQVHKTRESNSELILAVTDLEEMIELKDRVIVDLKSNLETWKNAEESQDKYNCQLEKTESKQYSGELDKDQHDIEELELLKQKIIELEVEIHIQEIQRGKLKMQIEQLTLNNESLKQENQDISMKLDENMEHYAIKQNEHSNSLVLVKELEEQIEMLEVKIERQAHALSKSLTTINQLQFQVKDLETEMEKQAQGFDDNINAMKSAKIKQEQRAIKAEEALRKTRWKNAVTAERLQEEFKKISAEMASKYDDNEKITMKAVTEADELRHQNSILEEMLQNANEECRVIKDQTAGKLQELSSQLDIKTKQTEEMLIELGNKSKELENIQNHDNTGKQEIQRLHSMIEKLTAEKPERELFNSAAERDNLETVSGLANKESDIANENLVKMKFLNDQKDMTIADLLSVVEDIKAQYNELKMATCKEDREKENLRKQVYQLKEELLKKEEIMTSAEKNLKHKTLETGASDVNPTSLNNESEAFVYNSTEVATSQKTVQLLQEKIQIKEAALENSTTSFLEEKEKLHSTIEELERKLELLTFETSEKVFNSQYRKLFLHQNIGLSSYLFVRLYTLISKLWVCRKWETYSDKEIQQPISIDSNETILRDLYSEISMLKEKNISMEKELKEMEERYSEVSLKFAEVEGERQQLVMTVRNLQNGKKN 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9871765 9876252 + Bpe005684.1 Bpe12g00427 112440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00427 957 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 90 - -
Bpe12g00427 957 Coils Coil 697 717 - -
Bpe12g00427 957 PANTHER BNAC08G20130D PROTEIN 121 957 - -
Bpe12g00427 957 Coils Coil 725 745 - -
Bpe12g00427 957 ProSiteProfiles C2 NT-type domain profile. 3 158 IPR019448 -
Bpe12g00427 957 Coils Coil 473 493 - -
Bpe12g00427 957 Coils Coil 375 423 - -
Bpe12g00427 957 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 7 91 IPR019448 -
Bpe12g00427 957 PANTHER BNAC08G20130D PROTEIN 1 90 - -
Bpe12g00427 957 Coils Coil 445 465 - -
Bpe12g00427 957 Coils Coil 530 550 - -
Bpe12g00427 957 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 121 957 - -
Bpe12g00427 957 Coils Coil 229 249 - -
Bpe12g00427 957 Coils Coil 187 221 - -
Bpe12g00427 957 MobiDBLite consensus disorder prediction 136 166 - -
Bpe12g00427 957 Coils Coil 809 836 - -
Bpe12g00427 957 Coils Coil 899 940 - -
Bpe12g00427 957 Coils Coil 562 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00427 - - - mcha:111025605 669.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00637 Bpe-Chr5:20217228 Bpe12g00427 Bpe-Chr12:9871765 6.31E-24 dispersed
Bpe12g00427 Bpe-Chr12:9871765 Bpe04g01560 Bpe-Chr4:21937556 8.94E-06 dispersed
Bpe12g00427 Bpe-Chr12:9871765 Bpe07g00115 Bpe-Chr7:830752 6.06E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007478 1 1 1 0 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00427 Bpe_Chr12 FPKM 0.25055 0.0 0.0 0.109063 0.635851 0.530554 0.520231 3.842063 3.758858 3.501119