Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00436 ATGGAAAGTCTTCACGAATTTTCAACAGGACCAGAAATTAACTGCTCAGATTCGGTTCTTACTCGACAGGTTTGCGATCATGATGAACTCCGGACGGAGCTCGAGTCTCTCCGGGAGGGCTATCGGAGTCTCGAATCGAAGCTTAGAGAGTTGGAGGATGCGAAGGTTGAGATTCAGAGTGAGAGAGATGATGAGGTGAATCGAAACGCGGAGTTAGTCAAAGGAATCGATGAGATTCGGAGAGAGAAGGAGTTTGTACGAAGTGAAGTTTCGAGGCTTCAAGTGGATTTGAGCGATAAAGAGGAAGCGTTCGCGAAAAGATTGGATGGGGAAGAGAAGGAGAAGGAGGAATTGAAGAACGAAGTGGAGGTTTGTAGGAAAAGGGTCGATAAATTGGAAAATGAGAGGCAAGAGAAGAAAGAAGTTCTTAATAAATGTCTGGATTCACTAGTTTCAGCGAAGGATTGCTTGACGAGGGTAATTGAAGGAATCTGCGAAGGAAAAGTCAAAGATGGTGGAGAAGAAAGCGAGGAAAGGAAGTTGGGATTGAAAATGGATGACGAATTAAGGCCACTTTCAGCTGGTATAGCGGAAGTGGACAGGCTTGCGAGGATGGTGGAGGTGAAGGTGGAAGAGTACAAAGAGCTCAGAAAGAAAGAGAAGAGAGAGTTGGAGAGTAGTTTGGTGAGTTTGACTGAGGAGAATCGTGATATTAACAGTCTGCTCCGGATTGCTCTGGTGGAGAAGGAGGCTGTAGAAAAGAGTTTAAATAGGTTGAAGGGAAATCCTGAGCAGAAGAGGGTGCCCCTTTTGCAGATTGCTGAGAGGGGGTTGCAGAGAGTTGGGTTTGGATTTATGATGGGTAGTGGTAATTATGAGCAGGCTGTAGACATTGCCGGAGTTAATGCTGGTAGTAAGGTTGATGAATTGGGTGCTAATTCAGAGACCAAGTCTGATAATAATGAAAGTGAAGAAGAAGTTATCAGCTTGGCTTCAACTGTGGAGAAAATAATGAAGAATTTACGATTCGAAATCACTCAACTGAGGAGGTCTTTGGATGAATCTAGGTCAGATACAGAGCGCCTGCAAAGTCTATGTGAAAAACAAACTCAGAGAATCGAAGAGAACTTTCTGTACATCAAGGAGTTAGAAGATCGAGAGAGGGTTTTGGTGCAAAATGTTGATGAACTTCTATTGGAAATAAAGGACACTGAAACGGAGGTTGCCAGGTGGAGGGAAGCTTGTGAACTAGAAGTTGAATTAGGAAAAAGTGAGATTATTGAACGTGACAAGGTGGTTGCCATTTTGAAACAAGAGCTTGAGAAAACAAAGACCGCCTTAGAAATATCAAATGGGAAATTGCAGCTGAAAGAAGAACTTGTAGCTGCAGCCATGGCTGCCCAGGCAGCAGCCGAAAAGTCTCTGCAAGTAGCAGACAGCCGGGCTGCAGTGCTCCGAGAAAGGGCGGAGGTATTAACAAGACAACTAGAAGAAGCCGAGAGCAGAGAGCGGCAGAATCGAAGGGTCAGGCGCTTGTGCTGGCCGTGGCGGGCCCCCAAGGTAAATACTTCTGCTAATTCAACAGATAGTGTGAAACGTATGTTGCCTGAAATGCAATCCCTGCTTCATTTCACCACCTGA 1641 45.16 MESLHEFSTGPEINCSDSVLTRQVCDHDELRTELESLREGYRSLESKLRELEDAKVEIQSERDDEVNRNAELVKGIDEIRREKEFVRSEVSRLQVDLSDKEEAFAKRLDGEEKEKEELKNEVEVCRKRVDKLENERQEKKEVLNKCLDSLVSAKDCLTRVIEGICEGKVKDGGEESEERKLGLKMDDELRPLSAGIAEVDRLARMVEVKVEEYKELRKKEKRELESSLVSLTEENRDINSLLRIALVEKEAVEKSLNRLKGNPEQKRVPLLQIAERGLQRVGFGFMMGSGNYEQAVDIAGVNAGSKVDELGANSETKSDNNESEEEVISLASTVEKIMKNLRFEITQLRRSLDESRSDTERLQSLCEKQTQRIEENFLYIKELEDRERVLVQNVDELLLEIKDTETEVARWREACELEVELGKSEIIERDKVVAILKQELEKTKTALEISNGKLQLKEELVAAAMAAQAAAEKSLQVADSRAAVLRERAEVLTRQLEEAESRERQNRRVRRLCWPWRAPKVNTSANSTDSVKRMLPEMQSLLHFTT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10143940 10147512 + Bpe005696.1 Bpe12g00436 112449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00436 546 Coils Coil 437 457 - -
Bpe12g00436 546 PANTHER OS08G0559800 PROTEIN 21 545 IPR040300 -
Bpe12g00436 546 Coils Coil 27 68 - -
Bpe12g00436 546 Coils Coil 101 149 - -
Bpe12g00436 546 Coils Coil 199 241 - -
Bpe12g00436 546 Coils Coil 475 509 - -
Bpe12g00436 546 Coils Coil 76 96 - -
Bpe12g00436 546 Coils Coil 338 358 - -
Bpe12g00436 546 Coils Coil 380 414 - -
Bpe12g00436 546 PANTHER OS08G0559800 PROTEIN 21 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00436 - - - tcc:18605588 543.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00795 Bpe-Chr10:14097659 Bpe12g00436 Bpe-Chr12:10143940 1.63E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g715 Blo06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0078 Cone15ag0079 . . . . . . . Bda15g00716 . Bpe12g00436 Bma08g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016619 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00436 Bpe_Chr12 FPKM 16.025736 17.025738 62.834705 61.740242 29.193134 32.552536 30.74811 28.048347 26.653118 27.341152