Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00438 ATGAAGTCTTACATTTGGCTTCAAACTGCTGATGGTTCGATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGCCCATTGATTTGTCGTGAAGTGCTTCAAAAAGGGGTGGGATCTTCCAAAAACTATGCCATATCTCTTCCACAACGAGTGAATCCTGCAATCTTGGGCATAATTCTTGACTATTGCCGGTTTCATCAAGTACCAGGTCATTCTAATAAGGAGCGTAAAAATTTTGACGAAAAATTCATTCGGATGGACACAAAAAGGTTGTGTGAATTGACATCTGCCGCTGACAGTCTTCAGTTAAAGCCTTTGGTTGATCTAACTAGCCGAGCACTTGCTCGAATAATTGAAGGGAAAACTCCAGAGGAAATCAGAGAAACATTTCATCTACCTGATGATCTAACAGAGGAGGAAAAGTTGGAGCCTCTAAGAAATATTGCTGACGATCCTCGTATACGACTTTTGAATCGATTATATGCTAGAAAGAGGAAGGAGTTAAAGGAACGTGAGAAATTGAAGAATGCTGAGACAGAGGAGGAGCATGTGGATGAGCGCTCAGTGGATGATCTCATGTCATTTATAAACGGTGAAGTTGGAGATTCAAAGGGAATCAAAGCCAATAAAACTAAGAAGAAAAATCGTAGAAGAAAAGATCATCCAAAGGATTTTTCTTCCAGTAATAATAATGGTACTCATAATAAGGATTTTGATGGTCTTCCTACTACTAGCCATTATGGCGAGGTTAGTGAAATTTTAGAGGCATCTTACATTGAAACGTTAAATTTGCAAGATTCTGCGGCTGCCAATTTTTCACCAAGACTTGATTTTGAAGATGGTGATGACATTGACGATGACTTAGATCCTGCAATGCAAGAAAAACTTGACAGGGAAGTTGAGGATTTTGCGCGAAGACTGAATTCCGATTGGCCAGAAAGAGTGCAGGAATTTTCGTCTCCCGGCCAAGAAAGAAATTTTGTTCCAGTAACAATGAATGGCCATGGTTCCACCCACAGATATTCAAGTATGTCCTTCATATTCATTTTACTTTTCTCAAAGTTTGGAAAGAAATGGATGTAA 1083 39.24 MKSYIWLQTADGSIQQVEEEVAMFCPLICREVLQKGVGSSKNYAISLPQRVNPAILGIILDYCRFHQVPGHSNKERKNFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNIADDPRIRLLNRLYARKRKELKEREKLKNAETEEEHVDERSVDDLMSFINGEVGDSKGIKANKTKKKNRRRKDHPKDFSSSNNNGTHNKDFDGLPTTSHYGEVSEILEASYIETLNLQDSAAANFSPRLDFEDGDDIDDDLDPAMQEKLDREVEDFARRLNSDWPERVQEFSSPGQERNFVPVTMNGHGSTHRYSSMSFIFILLFSKFGKKWM 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10150257 10153447 - Bpe005698.1 Bpe12g00438 112451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00438 360 SUPERFAMILY POZ domain 3 67 IPR011333 -
Bpe12g00438 360 Gene3D Potassium Channel Kv1.1; Chain A 1 149 IPR011333 -
Bpe12g00438 360 MobiDBLite consensus disorder prediction 226 240 - -
Bpe12g00438 360 PANTHER SKP1 1 253 IPR016897 GO:0006511
Bpe12g00438 360 PANTHER OS03G0107000 PROTEIN 1 253 - -
Bpe12g00438 360 SUPERFAMILY Skp1 dimerisation domain-like 77 146 IPR036296 GO:0006511
Bpe12g00438 360 Pfam Skp1 family, dimerisation domain 104 141 IPR016072 GO:0006511
Bpe12g00438 360 Pfam Skp1 family, tetramerisation domain 5 67 IPR016073 GO:0006511
Bpe12g00438 360 SMART skp1_3 2 103 IPR001232 GO:0006511
Bpe12g00438 360 MobiDBLite consensus disorder prediction 200 243 - -
Bpe12g00438 360 Coils Coil 157 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00438 - - - vvi:100247347 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00932 Bpe12g00438 CCT
Bpe07g00932 Bpe12g00438 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00438 Bpe-Chr12:10150257 Bpe15g00809 Bpe-Chr15:18264316 6.91E-15 dispersed
Bpe12g00438 Bpe-Chr12:10150257 Bpe07g00932 Bpe-Chr7:15230469 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g719 Blo06g01134 . . . . Bpe07g00932 . . . . . Cma15g01085 . Car15g00998 . . . . . . . . . . . . . . . . . Cone1ag1171 Cone5ag0879 Cone14ag0074 Cone15ag0077 . . . . . . Bda06g00689 Bda15g00715 . Bpe12g00438 Bma08g00296 Bma12g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00438 Bpe_Chr12 FPKM 13.535948 14.988907 43.740795 43.278664 30.176758 26.042046 32.121193 42.535595 41.702461 46.305439