Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00455 ATGCCATACTCTGCTTCAATGGCGACCGCCGGACAACTGCCCTGCGACGGAGATGGAGTTTGCATGGCCTGTAGGGGGAAGCCACTGGAAGAGGAGAGCCTGACATGCAAAACTTGTGCTACTCCTTGGCATGTTAACTGTCTTTCCAGCCCCCCTGAAACCCTAGCTTCGACTCTTCAATGGGAGTGTCCCGACTGTGTTCCGCCTACCGATGACTCTGCTATAAGCGAATGTGTCCCCGTCGATGCCTCCTCCAGTGGCCTGATCGCCGCTATCCGTGCGATTGAGGCTGATGTTTCGCTGACTGATGCACAGAAAGCGATGAGGCGTCAGGAGCTTTTGAGCGGCAAGAATCAGTCTGATGATGGTGGAGAGTCGTCGAGTAAGGATAAGAGGAAGAGAAGCGACGATGTTTTGGGAGTTCTTGATGAGAGCTTGAACTGTTCCTTCTGTATGCAGTTGCCTGAGAGGCCTGTCACGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCCAAAAGTGGATTGGACAAGGAAAACAAACCTGCGCAAAATGTCGCTGCTTGATTCCTTCCAAAATGGCAAGTCAGCCTCGCATCAATTCTGCTCTCGTAGTTGCCATTCGTATGGCCAAGATGTCAAAGTCAAATGCAACTGGCGATTCTCAAAAAATTTATCATTTTGTCCACAATCAGCATAGGCCTGACAAGGCATACACTACAGAGCGAGCCCAGAAAAGTGGGAAGGCCAATGCAGCAAGTGGGAAGATATTTGTTACTATCCCATCTGATCATTTTGGACCCATCCCTGCTGAAAATGATCCTGGACGAAATCAGGGTGTGCTTGTTGGTGAAACTTGGGAGGACAGGTTGGAGTGTAGACAATGGGGAGCTCACTTTCCTCATGTGGCGGGCATTGCAGGGCAGTCAAACTATGGTGCACAGTCAGTAGTTCTTTCTGGAGGTTACCAAGATGATGAGGATCATGGAGAGTGGTTTCTCTACACTGGGAGCGGTGGTAGAGACCTTAGTGGCAACAAACGAACGAGCAAGGACCAGTCGTTTGACCAGCAATTCGAGAAAATGAATAAAGCACTCAAACTTAGTTGTTTGATGGGCTATCCTGTTAGGGTAGTTTTTGGCTTCTTAGACAAGTTATATAACTGCTTTTCAGTTATTGAGATTACATATTTCTATGAAAACTCAAGTTGCATAACTTCTGCAAGTAACATGATGAATATTATTGAATTGAAGTCCCTCTGTTATAAACCTTTATTTTTTATTGGCAGGTCGCACAAAGAGAAACGCTCTTCATATGCCCCTGAGAAAGGTTTGCGGTATGATGGAGTCTATAGAATTGAAAAATGTTGGCGAAAAGTGGGAGTTCAGGGTTTTAAGGTTTGCAGGTACTTGTTTGTCAGGTGTGACAATGATCCAGCTCCTTGGACTAGTGATGAACATGGAGACCTGCCTAGAGCCTTTCCTGGAATCACAGAGTTAAAAAAAGCAACGGACATCACAGAGAGGAAGGGAAGTCCATCGTGGGATTTCAATGTGGAAGATAATTGCTGGGTGTGGAAGAAACCTCCACCAGCAAGCAAGAAACCAATTGAAGTAGAAGGTTGTGATTCAAGAAAGAGATCAATAAGAGCGATCAGGAAAGCTCATAAAATGACTGTTAGAGAAAGATTATTGAAAGAGTTCAGCTGCCTTATATGCAGACAGGTAATGGCTCAGCCCGTGACAACTCCCTGTGCGCATAATTTTTGCAAGGCATGCTTGGAAGCCCGGTTTGCTGACAAGACATTCATGAGAGACAGAAGCAAAGGTGGAAGGACACTTCGGTCCCGAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAAAATCCTCAGGTAAATAGGGAGTTACTTGATGTAATCGAAACACTAAAAAGTCAGAATGAAGAAAATGGCAATTCTGCTGATGAGTCATCTGAAGATGAAACTATCGATCAAGAGGAGAGCAAAGATAATACTGCCGAGACATCAGCGGTACCAAATAAGGATAATGACGCCGAGGTGCATCCTAGTGAAGTGACTCCAAAAAGGGCTCAAAAGCGAATGAAAATCTTCGATGAAACAGAGACCATCGATGCAGCCAAAAGTGGTGGCACAGCAGGATTAACTGAAGAATGCGATGGATCAGAAAAGGAAACTGCAAGCAGGAAAGCTAAGGAAATGATGGATGGAGGTAATAGCGATTCTCCGTCTAGTCCTCTCAACATGAAATCCGATGTTGATCTCGAATGA 2310 45.24 MPYSASMATAGQLPCDGDGVCMACRGKPLEEESLTCKTCATPWHVNCLSSPPETLASTLQWECPDCVPPTDDSAISECVPVDASSSGLIAAIRAIEADVSLTDAQKAMRRQELLSGKNQSDDGGESSSKDKRKRSDDVLGVLDESLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKQTCAKCRCLIPSKMASQPRINSALVVAIRMAKMSKSNATGDSQKIYHFVHNQHRPDKAYTTERAQKSGKANAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSNYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQQFEKMNKALKLSCLMGYPVRVVFGFLDKLYNCFSVIEITYFYENSSCITSASNMMNIIELKSLCYKPLFFIGRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDLPRAFPGITELKKATDITERKGSPSWDFNVEDNCWVWKKPPPASKKPIEVEGCDSRKRSIRAIRKAHKMTVRERLLKEFSCLICRQVMAQPVTTPCAHNFCKACLEARFADKTFMRDRSKGGRTLRSRKNIMICPSCPLDISDFLQNPQVNRELLDVIETLKSQNEENGNSADESSEDETIDQEESKDNTAETSAVPNKDNDAEVHPSEVTPKRAQKRMKIFDETETIDAAKSGGTAGLTEECDGSEKETASRKAKEMMDGGNSDSPSSPLNMKSDVDLE 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10277793 10283498 + Bpe005713.2 Bpe12g00455 112468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00455 769 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 384 IPR045134 -
Bpe12g00455 769 MobiDBLite consensus disorder prediction 660 674 - -
Bpe12g00455 769 MobiDBLite consensus disorder prediction 111 136 - -
Bpe12g00455 769 SUPERFAMILY PUA domain-like 250 388 IPR015947 -
Bpe12g00455 769 MobiDBLite consensus disorder prediction 691 716 - -
Bpe12g00455 769 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 428 750 - -
Bpe12g00455 769 SUPERFAMILY RING/U-box 139 194 - -
Bpe12g00455 769 MobiDBLite consensus disorder prediction 651 769 - -
Bpe12g00455 769 ProSitePatterns Zinc finger RING-type signature. 585 594 IPR017907 -
Bpe12g00455 769 ProSiteProfiles Zinc finger RING-type profile. 148 187 IPR001841 -
Bpe12g00455 769 SMART PHD_3 20 67 IPR001965 -
Bpe12g00455 769 ProSitePatterns Zinc finger PHD-type signature. 21 66 IPR019786 -
Bpe12g00455 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 67 IPR013083 -
Bpe12g00455 769 SUPERFAMILY RING/U-box 563 654 - -
Bpe12g00455 769 SMART G9a_1 271 478 IPR003105 -
Bpe12g00455 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 215 IPR013083 -
Bpe12g00455 769 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 7 384 - -
Bpe12g00455 769 Gene3D - 247 492 IPR036987 -
Bpe12g00455 769 SUPERFAMILY PUA domain-like 430 508 IPR015947 -
Bpe12g00455 769 SMART ring_2 570 626 IPR001841 -
Bpe12g00455 769 SMART ring_2 21 66 IPR001841 -
Bpe12g00455 769 SMART ring_2 148 186 IPR001841 -
Bpe12g00455 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 680 IPR013083 -
Bpe12g00455 769 Pfam SAD/SRA domain 276 477 IPR003105 -
Bpe12g00455 769 MobiDBLite consensus disorder prediction 731 749 - -
Bpe12g00455 769 Pfam RING-type zinc-finger 570 604 IPR027370 -
Bpe12g00455 769 ProSiteProfiles Zinc finger RING-type profile. 570 626 IPR001841 -
Bpe12g00455 769 ProSiteProfiles YDG domain profile. 276 474 IPR003105 -
Bpe12g00455 769 CDD RING-HC 148 186 - -
Bpe12g00455 769 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 428 750 IPR045134 -
Bpe12g00455 769 SUPERFAMILY FYVE/PHD zinc finger 12 70 IPR011011 -
Bpe12g00455 769 ProSiteProfiles Zinc finger PHD-type profile. 18 69 IPR019787 -
Bpe12g00455 769 Pfam Zinc finger, C3HC4 type (RING finger) 148 186 IPR018957 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00911 Bpe12g00455 CCT
Bpe07g00911 Bpe12g00455 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00455 Bpe-Chr12:10277793 Bpe14g01288 Bpe-Chr14:9798260 2.73E-13 dispersed
Bpe12g00455 Bpe-Chr12:10277793 Bpe07g00911 Bpe-Chr7:15082699 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00455 K10638 - csv:101219001 967.992