Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00459 ATGGCTAGAGTTCTTGTACAGTCAACAAATATACCCGGGCTAGTCTCTGGGCAGAAGGATGGCCAGTTGAGGGGACCTGGAAATACAAAATCGGCAGTCAGAATGATGAGTAGTGTACAGTCGCTTGGATTGGGGATGAGAGGTTTCTCAGGATTAAGAGGTTTTAATGCTTTAGATACCATGGTCAGGCCTGGGCAAGATTTTCATTCCAAAATAGCAATTTCTCTTTCTTCTCGAAGACAAAGAAGGGCCACCAGATGTGTTCCAAAAGCAATGTTCGAGCGATTCACTGAAAAAGCAATTAAAGTTATTATGCTTGCCCAAGAGGAAGCAAGACGACTTGGTCATAATTTTGTCGGTACAGAACAGATCTTATTGGGTCTTATTGGTGAAGGTACTGGTATTGCTGCAAAGGTTCTTAAATCAATGGGAATTAATCTTAAAGATGCACGAGTGGAAGTGGAGAAAATAATCGGACGAGGTAGTGGATTCGTAGCTGTGGAGATTCCATTCACCCCCCGTGCAAAGCGTGTATTGGAGCTCTCATTGGAGGAAGCTCGCCAACTTGGTCATAACTATATCGGATCTGAGCATTTGCTTCTTGGATTACTTCGTGAGGGTGAGGGTGTTGCAGCCCGTGTTCTTGAAAATTTAGGAGCTGACCCTAGCAATATCCAGAGACTCTATAATATCTTCTTGTTTCAGTGTATTGGAGCCACAACACTAGATGAATATAGAAAACACATCGAGAAAGACCCAGCTTTAGAAAGGCGATTCCAGCCAGTCAGAGTACCTGAACCAACTGTGGATGAAACCATACAGATTCTGAAAGGGCTTAGGGAGCGCTATGAGATTCACCACAAGCTTCGCTACACGGATGAAGCTCTAGTAGCTGCTGCACAGTTGTCGTATCAATATATCAGTGATCGATTTCTGCCTGATAAAGCAATTGACTTGATTGACGAAGCTGGTTCTCGTGTTCGGCTTCGCCATGCACAGGCATCCAGAGAGCTTGAGAAAGAGCTCAGGCAGATCACCAAAGAAAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGATCTGAAGGCACAGATCTCCACTCTTGTGGATAAGGGCAAGGAGATGAGTAAAGCAGAGAGCGAAGCATCTGATGTAGGCCCTGTTGTGACTGAAGTCGACATTCAGCACATTGTGTCTTCATGGACTGGTATACCCGTCGAAAAAGTGTCAACCGACGAGTCGGATCGACTTCTGAAAATGGAAGAGACCCTTCACAAGAGGGTCATCGGACAGGATGAAGCCGTAAAAGCAATTAGCCGCGCCATTCGCCGAGCTCGTGTTGGACTGAAGAACCCCAATCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTCGGGAAATCTGAACTGGCCAAGGCCTTGGCTGCTTACTACTTTGGGTCTGAAGAAGCAATGATTCGGCTTGACATGAGTGAGTTTATGGAAAGGCACACCGTCTCTAAGCTCATTGGATCACCCCCAGGATATGTTGGTTACACCGAGGGTGGTCAACTGACGGAGGCTGTCAGACGCCGCCCATACACAGTGGTCCTCTTTGATGAGATCGAGAAGGCCCATCCGGATGTCTTCAACATGATGCTCCAAATTCTCGAGGATGGAAGATTGACCGACAGCAAGGGGAGAACTGTCGACTTTAAGAACACTCTTCTCATAATGACGTCAAACGTCGGAAGTAGCGTAATCGAGAAAGGAGGCCGGAGAATAGGATTTGATCTTGATTACGACGAGAAGGACAGCAGCTACAACCGAATCAAGAGCTTAGTGACTGAGGAACTGAAACAATACTTCCGACCAGAGTTTTTGAACAGATTGGACGAGATGATTGTTTTCCGGCAGTTGACGAAGTTGGAGGTGAAAGAGATAGCCGATATAATGCTAAAGGAGGTTTTTGACAGGCTGAAGAGCAAAGAAATTGAACTTCAAGTGACCGAGAGGTTTAGAGATAGAGTGGTGGATGAAGGCTATAACCCGAGCTATGGGGCCCGGCCCTTGAGAAGGGCTATAATGAGATTATTGGAGGACAGTATGGCAGAGAAGATGCTTGCCCGGGAGATCAAGGAAGGTGACTCTGTCATTGTGGACGTCGACTCCGACGGCAACGTCACAGTACTCAACGGCAGCAGTGGGGCTCAGGAGTCATTGGCAGAGTCAATTCCTGTGTAA 2259 46.75 MARVLVQSTNIPGLVSGQKDGQLRGPGNTKSAVRMMSSVQSLGLGMRGFSGLRGFNALDTMVRPGQDFHSKIAISLSSRRQRRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIQRLYNIFLFQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQASRELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLVDKGKEMSKAESEASDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKSKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAQESLAESIPV 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10338239 10343189 + Bpe005719.1 Bpe12g00459 112472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00459 752 ProSiteProfiles Clp repeat (R) domain profile. 93 239 IPR004176 -
Bpe12g00459 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 514 532 IPR001270 GO:0005524
Bpe12g00459 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 543 561 IPR001270 GO:0005524
Bpe12g00459 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 576 590 IPR001270 GO:0005524
Bpe12g00459 752 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 469 487 IPR001270 GO:0005524
Bpe12g00459 752 Coils Coil 328 355 - -
Bpe12g00459 752 PANTHER ATP-DEPENDENT CLP PROTEASE 79 193 - -
Bpe12g00459 752 SMART AAA_5 465 646 IPR003593 -
Bpe12g00459 752 Pfam AAA lid domain 268 366 IPR041546 -
Bpe12g00459 752 Gene3D - 645 745 - -
Bpe12g00459 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 568 IPR027417 -
Bpe12g00459 752 PANTHER ATP-DEPENDENT CLP PROTEASE 234 748 - -
Bpe12g00459 752 CDD AAA 439 587 - -
Bpe12g00459 752 Gene3D - 269 416 - -
Bpe12g00459 752 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 186 218 - -
Bpe12g00459 752 SUPERFAMILY Double Clp-N motif 94 226 IPR036628 -
Bpe12g00459 752 Pfam C-terminal, D2-small domain, of ClpB protein 645 725 IPR019489 -
Bpe12g00459 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 731 IPR027417 -
Bpe12g00459 752 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 234 748 - -
Bpe12g00459 752 Pfam Clp amino terminal domain, pathogenicity island component 183 227 IPR004176 -
Bpe12g00459 752 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Bpe12g00459 752 Pfam AAA domain (Cdc48 subfamily) 464 638 IPR003959 GO:0005524|GO:0016887
Bpe12g00459 752 Gene3D UVR domain 336 388 - -
Bpe12g00459 752 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 79 193 - -
Bpe12g00459 752 ProSiteProfiles UVR domain profile. 339 374 IPR001943 GO:0005515
Bpe12g00459 752 PANTHER ATP-DEPENDENT CLP PROTEASE 186 218 - -
Bpe12g00459 752 SMART ClpB_D2_small_2 645 735 IPR019489 -
Bpe12g00459 752 ProSitePatterns Chaperonins clpA/B signature 2. 499 517 IPR028299 -
Bpe12g00459 752 Gene3D - 92 231 IPR036628 -
Bpe12g00459 752 Gene3D - 417 643 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00459 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - jre:109003075 970.304
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00459 Bpe15g00585 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00332 Bpe-Chr3:5278049 Bpe12g00459 Bpe-Chr12:10338239 1.26E-11 dispersed
Bpe12g00459 Bpe-Chr12:10338239 Bpe14g00156 Bpe-Chr14:1997359 1.14E-147 dispersed
Bpe12g00459 Bpe-Chr12:10338239 Bpe07g00907 Bpe-Chr7:15050510 5.50E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00459 Bpe_Chr12 FPKM 8.885786 10.088226 12.278875 13.598489 18.679667 20.273722 19.606934 15.559913 15.145397 13.50529