Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00460 ATGAAAACATCAAGTTTGAAATTATTTTCTGTTGGATTGAAGAAGAGCGAATTCCCGGCTTTGAGGACCTCTCGCCTCCAAGTTTGTTGTGCAGCAAAACCCGAGACAGTTGATAAAGTCTGCGCAATTGTGAGGAAACAACTGGCTTTGCCTCCAGAATCAGAGCTCACTCCTGAATCCACATTTTCCTCGCTCGGTGCCGATTCACTCGACACATTGTTATATCTGTTGGGGGACATCACTGCTGGGCCTGCTTATAGTTTCACTCAATGGGTGGAGTTGGTCCGTAAACGCAGTGGCAAATTTCGGTCCTCTGGCTTTCCGAATCGCCCTCCAGGGCTCCATTCTCCTTTCAGTGCAGGAGAACTAGTTGATGATTCAGATAGTCCTCAACTGCCTGAGCAAAGTACAGAACCCAGTTTATGGGAAAGACTTGGAAAAGCTTCTGTCTTGGATGTTGAGTCGACTACTTTTTGTTGGGACATTCTTTCATCTCTTCACCACACTGAACATAGCAGTGGCACTGAACAGCCTGAAGAAGAAAGCAGCAAGGTTCTTGAGGTCACTGTGAATTCCGGGGGAGTTGTTTTCTTTGCCTTATTTAATACGTTAGGTGATGATAGTGTTCTCCCGATGGAAGCGACTGCTGTAATAAAGATATCATCATCCAGAATGGTTACACAATCTGAACGTCTTGGATATGAAATCGCAAAGTGGTTGGGAGTTCGAACTCCACTGGCTAGGGTAATTCATAATTCTAGCCCGGAGTGGCTGCATATAAAAGAAGCCACGGAGAGAGTACGAGTCCTAGCTTGTTCACAAGGTGATGAAGCTGGTGAAATGACATCTTCTGAACTTTTAGAAGCTCTTGAACTTAGCAAATGTCTTTTATTAATGAGTTATGTGCATGGATCTCCTTTGTTAGAAAGCACAAGCGCATTTGAATCAAAGAAAACCACTGCAAAAATAGCAGCTGCTCTTGGTAGAGTTTTGATGTTGGATCTTATTATCAGAAATGAAGATAGACTCCCTTGTAGTCCTCTAAGATGGCGTGGTAATTCTGCAAATTTATTGTTGGTTTATAAAATGGTTCATGAAAGTGTTGATCCGCTGGAAGAGGCCATAAATTCTGAAGTCAAGAAATACAAACCTAGGGTGATTAAAGCTTTTGAAAAAGAAAGAAGAGCAATATCTATTGATAGTAGATTAAGTTTTTCTGACTCTGGGTGTCTATCAAATGCGTCTCATCTTTCCGATTTTGTTGAAAAAACTCAAACTTCAAATGGATCGATGCTATCAGATTTTCATATTGTGGCTATTGATTCTGGTGTTCCTCGCCGACCTCCAAGTGGAAAACGTGCAAATGACCAAGCCATTTATCCAAAGTTTGTTGAATTACTACTGAACAGTTTTGAGTACTCCTCTGATGTTCTACATGCCATTACAGGAGGAAAATTAGGATTTCCTTCACCAGAAGATTCCCCCACAGATAGGGATTCATGGCCAGTGGAAATAACTTCAGATGTTCATGAATTTCGTTGTGGATTCCGTGCAGCTCTTAGGGACATGCAGGGTTTCCACATATTTTTCCTTACCCTACACCAAAAATTGGAAAATTCATTAAGGGCATTTGATGTTATCATGAATAAACTTTCAGCGGAATCTGATAAAGAAGATTTGGGAATCTCTGAGTTTTCCTCACAGTCTGCTGGAGGTGCTTATTCCCGCTCTTCCGATGGTAAAGAGAAGATTTCTAATGATAACCATACTGATTGTTGTGATTCAGAAATTCAAAGATCTGGTCCAAGGTCATTAGCCTCTGGGAAGAAAGAAAATTCTGATTCATCTCCTCCACTTTCTCGTGACAATTGGCCAAGAAAGTCTTACAAAGGAAGTGGCGATGATATCCGTAACTTTCGTTTAACAGGAAAGCTCAGAGACATCCACAAATTTGCAAAGGTGGATGCTGAATTGAGCAAGGAAATGGAACAATGGACTGAAATATTGAAAAATGATGTTGTCAAACTCTGTCAGGAGAACAATTTTAACACTGGATTTTTTGAGGGTAGCGATAATAATATCGTTGTTGATGCATATGAATTAAAGTTACGACTTGAGCACATTCTTGAGAGAATTGCTCTAATATCTGAGGCTGCAAATACAGAGAGACCTTCTTTGATTACTAGCTCACTATTCATAGGGGGTGCGTTGGCTGCTAGATCTGTGTACACACTGCAGCATTTAGGAATTTCGCATATTTTGTGTTTGTGCGCTAATGAATTTGGACATGTAGATTCTCAGTTTCCAGATATGTTCCAGTATAAAAATTTCTCTATATGTGACTCTGAAGACTCTAATATCAGAGCAATATTTGACGAAACTTCAGACTTTATTGATCATGTTGAACAAATTGGCGGCAAGGTTCTAGTCCACTGCTTTGAAGGAAAAAGTAGAAGCTCTACGGTTGTGCTTGCATACTTGATGCTCAAGAAGAACTTGTCTCTATTGGAAGCATGGGATGGCTTGAAACGAATTCACCGCCGAGCCCAGCCAAACGATGGGTTTGCGAGAATTCTATTAGAGCTAGACAAGAAACTTCACGGAAAGTTTTCTATGGAGTGGCAACAGAGGAAGCCGACGATGAAGGTTTGCCCAATATGCGGTAAGAATGTCGGTCTGAGCAGCAGCTCACTTAAGCTTCATGTGCAGAAATCACACAAGAAGCTGTCATCAGGTAGCGTGGATAGTGCTATGACAATGGAGATACAAAAAGCTTTGGCTGCTCTTCAAATTAGCCGTGGGGGAAGTGTCAGTCCAACTCTGAGGCAGTCTAATTTGGTATTTGATTGA 2850 41.26 MKTSSLKLFSVGLKKSEFPALRTSRLQVCCAAKPETVDKVCAIVRKQLALPPESELTPESTFSSLGADSLDTLLYLLGDITAGPAYSFTQWVELVRKRSGKFRSSGFPNRPPGLHSPFSAGELVDDSDSPQLPEQSTEPSLWERLGKASVLDVESTTFCWDILSSLHHTEHSSGTEQPEEESSKVLEVTVNSGGVVFFALFNTLGDDSVLPMEATAVIKISSSRMVTQSERLGYEIAKWLGVRTPLARVIHNSSPEWLHIKEATERVRVLACSQGDEAGEMTSSELLEALELSKCLLLMSYVHGSPLLESTSAFESKKTTAKIAAALGRVLMLDLIIRNEDRLPCSPLRWRGNSANLLLVYKMVHESVDPLEEAINSEVKKYKPRVIKAFEKERRAISIDSRLSFSDSGCLSNASHLSDFVEKTQTSNGSMLSDFHIVAIDSGVPRRPPSGKRANDQAIYPKFVELLLNSFEYSSDVLHAITGGKLGFPSPEDSPTDRDSWPVEITSDVHEFRCGFRAALRDMQGFHIFFLTLHQKLENSLRAFDVIMNKLSAESDKEDLGISEFSSQSAGGAYSRSSDGKEKISNDNHTDCCDSEIQRSGPRSLASGKKENSDSSPPLSRDNWPRKSYKGSGDDIRNFRLTGKLRDIHKFAKVDAELSKEMEQWTEILKNDVVKLCQENNFNTGFFEGSDNNIVVDAYELKLRLEHILERIALISEAANTERPSLITSSLFIGGALAARSVYTLQHLGISHILCLCANEFGHVDSQFPDMFQYKNFSICDSEDSNIRAIFDETSDFIDHVEQIGGKVLVHCFEGKSRSSTVVLAYLMLKKNLSLLEAWDGLKRIHRRAQPNDGFARILLELDKKLHGKFSMEWQQRKPTMKVCPICGKNVGLSSSSLKLHVQKSHKKLSSGSVDSAMTMEIQKALAALQISRGGSVSPTLRQSNLVFD 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10343710 10354371 - Bpe005720.1 Bpe12g00460 112473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00460 949 ProSiteProfiles Dual specificity protein phosphatase domain profile. 723 868 IPR020422 GO:0006470|GO:0008138
Bpe12g00460 949 MobiDBLite consensus disorder prediction 562 629 - -
Bpe12g00460 949 Pfam Actin-fragmin kinase, catalytic 138 444 IPR015275 -
Bpe12g00460 949 Gene3D Protein tyrosine phosphatase superfamily 706 878 IPR029021 -
Bpe12g00460 949 SUPERFAMILY Protein kinase-like (PK-like) 90 458 IPR011009 -
Bpe12g00460 949 MobiDBLite consensus disorder prediction 580 596 - -
Bpe12g00460 949 ProSitePatterns Tyrosine specific protein phosphatases active site. 810 820 IPR016130 GO:0016311|GO:0016791
Bpe12g00460 949 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 788 844 IPR000387 GO:0016311|GO:0016791
Bpe12g00460 949 Gene3D - 32 78 IPR036736 -
Bpe12g00460 949 Pfam Dual specificity phosphatase, catalytic domain 739 864 IPR000340 GO:0008138|GO:0016311
Bpe12g00460 949 SMART dsp_5 723 865 IPR020422 GO:0006470|GO:0008138
Bpe12g00460 949 MobiDBLite consensus disorder prediction 103 139 - -
Bpe12g00460 949 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 71 948 - -
Bpe12g00460 949 Gene3D - 306 470 IPR036940 GO:0016301
Bpe12g00460 949 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 723 868 IPR029021 -
Bpe12g00460 949 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 71 948 IPR035010 GO:0004721|GO:0009737|GO:0043622
Bpe12g00460 949 CDD DSP 724 861 - -
Bpe12g00460 949 MobiDBLite consensus disorder prediction 597 622 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00460 K14165 K14165; atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] - cit:102630871 1203.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01185 Bpe-Chr4:13571777 Bpe12g00460 Bpe-Chr12:10343710 2.24E-26 dispersed
Bpe04g01698 Bpe-Chr4:22896576 Bpe12g00460 Bpe-Chr12:10343710 1.61E-18 dispersed
Bpe10g00796 Bpe-Chr10:14106451 Bpe12g00460 Bpe-Chr12:10343710 4.67E-15 dispersed
Bpe12g00460 Bpe-Chr12:10343710 Bpe14g01151 Bpe-Chr14:8576897 4.20E-13 dispersed
Bpe12g00460 Bpe-Chr12:10343710 Bpe13g00646 Bpe-Chr13:13310984 6.85E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00460 Bpe_Chr12 FPKM 4.537424 5.349733 5.973547 6.87121 12.014987 7.316227 10.426118 11.676852 11.029209 10.140879