Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00465 ATGCATAGACCCGTTCCAAGGATTGTCGGTTTTGAATCAAGAGCTTTCAAATCTCCTATGGTGCTTGATGAAAGCAATTCTTCTTCTGCTTCTGTAGTTAAGAAGCGATTATTGTCTCCTTTGAACGAAATGATTTCGCCGGATCAATTTAATGGTGATGCTCTTGACATTGGTAGGTGTAAAGTTTCTGGTTTGCATGATCATAAAAAAGCTCATATCAGCCTGAAGAGGGAGATATCATTTCCTCTTTCTTTGTCTCCACTTGGTCAAAAATTCTCTGAAAGAATGAATTTCATGACAATTCAAAGGAACATTGCTCCTAATTTTAGAGATTGTGATATAACATTCAAGCAGATGGAGCAGCCACTCGATGAAACTGCTTCAAGTATATTAACTTCTCAGAACGAAGACGTTCATGGGTCTTCTAGCAATTCTTGGAAAGATTTCGATAAACTCCAGACGAAGTTTGGCCTTTTCATGCCCATTGATACAACTGAAAAGAGACAACATTCTTACGAGGACTTAAAACTTAGATCTGGAAGTTTCAAATTGGTTAAAGGGCCTTTAGTTGGCTCATTTGAGGAGTCTCTCTTGTCTGGTAGATTGTTAACCAGCAGATTCAGTGCGAAAATCGATGGCTTCCTGGCTGTCTTAAATTTCAACGGAGGGAGTTTTTCTCCTCGATCACGCAAACTTCCATTTTTAGTTAACAGCATTGAGGGAGAGAACTACCTTTTGTATTATTCATCAATAGATTTAGCTGGGAATATGGCATCCAACAAAACAAGAGATCCCAGAATGAGCAGGAGCCTAAGTATGTATGAATCTCGCATGGAAAGCAGTCGTCTGCGAATACCTATGAAAGGATATGTACAGTTGGTAAATGGCTTCTTTGTCCTAAAAATGATTAATCAGTATTTTGGCCGTTGTGAACTGAATTTCGTTTTTCAGGTTCTCAGCAATCCAGAGAAGACTCCTATTCATACCTTCTTTTGTAACTATGATCTTAGTGATATGCCAGCTGGTACCAAGACTTTTCTACGCCAGAAGATTACTCTAGCCTCTTCTTCCACAACACAAATACCTGAGAACAGATGCAAAGTTGACACGAAAGACAAGGTTAACGCCTTGAAAAATAATCATATTTGGTCGTGTGGTCAAATGGAGGGCAAGTCGAAGAGCATACCCTCGTATTGTGGAGGCTTTGACAGCCATGAATTTGAAAATACAAATGGACATAGTCTTTCTAAAGCAAACAAGAGAACAAACTCAGTTGGCGTTCTTCGCTATGCTCTTCACCTTCGCTTCTTATGTCTATTTACGAAGAAGTGTTCAAGGCCAATCCAGAGGTGTGAATCGGATTCCTTATCTGCATCGATGAGAAATGAAGCAGACATTCGAGAGAAAAGACGATTCTACTTGTATAATGATTTGAGGGTCGTATTTCCCCAACGCCAATCAGATGCCGACGAAGGAAAGTTAAACGTGGAATATCATTTTCCTTCGAACCCGAAGTACTTCGATATCAGCAAGTAG 1536 39.71 MHRPVPRIVGFESRAFKSPMVLDESNSSSASVVKKRLLSPLNEMISPDQFNGDALDIGRCKVSGLHDHKKAHISLKREISFPLSLSPLGQKFSERMNFMTIQRNIAPNFRDCDITFKQMEQPLDETASSILTSQNEDVHGSSSNSWKDFDKLQTKFGLFMPIDTTEKRQHSYEDLKLRSGSFKLVKGPLVGSFEESLLSGRLLTSRFSAKIDGFLAVLNFNGGSFSPRSRKLPFLVNSIEGENYLLYYSSIDLAGNMASNKTRDPRMSRSLSMYESRMESSRLRIPMKGYVQLVNGFFVLKMINQYFGRCELNFVFQVLSNPEKTPIHTFFCNYDLSDMPAGTKTFLRQKITLASSSTTQIPENRCKVDTKDKVNALKNNHIWSCGQMEGKSKSIPSYCGGFDSHEFENTNGHSLSKANKRTNSVGVLRYALHLRFLCLFTKKCSRPIQRCESDSLSASMRNEADIREKRRFYLYNDLRVVFPQRQSDADEGKLNVEYHFPSNPKYFDISK 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10386934 10389872 - Bpe005725.1 Bpe12g00465 112478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00465 511 Pfam Chromosome segregation during meiosis 427 509 IPR033473 -
Bpe12g00465 511 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 72 294 - -
Bpe12g00465 511 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 2 77 - -
Bpe12g00465 511 PANTHER GH03947P 318 510 - -
Bpe12g00465 511 PANTHER GH03947P 2 77 - -
Bpe12g00465 511 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 318 510 - -
Bpe12g00465 511 PANTHER GH03947P 72 294 - -
Bpe12g00465 511 SMART DUF4210_2 189 248 IPR025261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00465 - - - vvi:100266395 397.897
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g45 . . . Bda15g00688 Bpe12g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004261 2 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00465 Bpe_Chr12 FPKM 15.119102 14.890011 37.365429 32.92672 5.103357 4.977875 6.32709 584.81427 603.899963 578.818481