Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00472 TTTGTAATGGCGGATCCAAGTTTCGACTCCATTGGAGCTGACGAACCAGACCTCGATCTTTACACGATTCCTGGCCACTCAAGTTGGTTTTTGTGGGACGAAATTCACGAAAATGAGAAATCAGCTCTGAGTGAGTTTTTTGATGGAAATTCTATATCAAGAACCCCGAGGATATATAAAGAATACAGAGACTTCATCATCAACAAGTACAGAGAAGACCCCTCAAGGAGGCTTACGTTCACTGAGGTTCGAAAGTCTTTGGTTGGTGATGTTAATACACTTCATAAGGTTTTTCTTTTTCTGGAGAAATGGGGGTTGATCAACTACGGTGCTCCTTTGAGTGCTGAAAGTTCTATGGTCATGGAGAACTGTGAGACCACAAGAATCAGGATCGATAATGGAGTTCCAAATGGGGTTCGAGTTGGTGCAATGCCAAATTCTGTGAAACCTATTGCAGCACCGCCTGGTGTTGAAGATAATCCAGTTGTGCTTGAGAATGGATTTAAATTGCCTTTACTGGCCTCATATTCTGATGTTTTTGGTGATTTGATGAAGCAGAATAAGTTGAGTTGTGGGAATTGTGGGGAAGAGTGCAGTTCTAGTTATTATAAATATACCAAGAGTGATTTTGTCATTTGTAAAAATTGTTACACTGATGGAAAATACGGAGAAGAGAAGTCTGTGGATGATTTCAATCTCCATGAATACGTTGAAAACAGTGGTAGTCATGGAGCAGTATGGACTGAGGAAGAAATTCTACTTCTCTTGGAATCTGTCTTGAAGCACGGGGATGTCTGGGAGCTTGTAGCTCAAGAAGTTCAAACTAAGACTAAACTTGAGTGCATATTAAAGCTAATTGAGCTGCCTTTAGGGGAGTTTATGCTACCCTCTGCCTGCAGAGAGGATGGTTATAATTTTTCTGAGTGCAACTTAAGCAGTGTAAAAGAAAATGAGCTGATTTCATCTACAGATCAGGAGGCGTTCAAACAGGAAAATCAATGCCAAAAGTACGATGGAGATGCTTTGAATCAAGGTCCTTCGAAAAGGAGGCGGATAACTTCCATTCCAGAAGCTGGTGGTTCTTTGATGAAACAGGTGGCATCAATTTCCACCATGGTTGGGCCACGTGTCATGGCAGCTGCAGCAGATGCTACTATTACAGCAATTTGTGACCAAAACTTTTGTTCTAGGGAGATATTTGATGGTCAAGATTATTCCATAACCAATGGCGCGATCTCTTTCCCTACAAATTGCGAAACGGAGAGGTATGTTGTTTCAGGTTCCCATGCATCTATTCTAAATCTACTTCTCTTTAAAGAAAGCGATGGAACGTCCCTAACTAAGGATGGGATGCCTCCAATTTTGCGAATGAGAGCTGCCATAGCAACAGCTCTAGGGGTTGCGGCTGCTCATGCCAAAATATTGGCTGAGCAGGAAGAGAGAGAAATGGAGCATTTGGTTGCAACCATTATTGAGGCTCAGATGAAAAAGTTGAACTCCAAGATGAAGCATTTCGAAGAACTTGAGCCGATAATGGAGAAGGAACTCGAGGGAATGGAAGAAATGGTCGACTCCCTATTGACAAAGCAGATTGATGCCCATCAAATGGTGCTCGGCCTTGGAATTTCAAAATCGAAGCTTCATTCTTCAGTCAAATCTCAGGAGTGA 1668 42.09 FVMADPSFDSIGADEPDLDLYTIPGHSSWFLWDEIHENEKSALSEFFDGNSISRTPRIYKEYRDFIINKYREDPSRRLTFTEVRKSLVGDVNTLHKVFLFLEKWGLINYGAPLSAESSMVMENCETTRIRIDNGVPNGVRVGAMPNSVKPIAAPPGVEDNPVVLENGFKLPLLASYSDVFGDLMKQNKLSCGNCGEECSSSYYKYTKSDFVICKNCYTDGKYGEEKSVDDFNLHEYVENSGSHGAVWTEEEILLLLESVLKHGDVWELVAQEVQTKTKLECILKLIELPLGEFMLPSACREDGYNFSECNLSSVKENELISSTDQEAFKQENQCQKYDGDALNQGPSKRRRITSIPEAGGSLMKQVASISTMVGPRVMAAAADATITAICDQNFCSREIFDGQDYSITNGAISFPTNCETERYVVSGSHASILNLLLFKESDGTSLTKDGMPPILRMRAAIATALGVAAAHAKILAEQEEREMEHLVATIIEAQMKKLNSKMKHFEELEPIMEKELEGMEEMVDSLLTKQIDAHQMVLGLGISKSKLHSSVKSQE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10485787 10489111 + Bpe005732.1 Bpe12g00472 112485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00472 555 Pfam SWIRM domain 24 109 IPR007526 GO:0005515
Bpe12g00472 555 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 20 544 - -
Bpe12g00472 555 ProSiteProfiles Myb-like domain profile. 247 281 IPR001005 -
Bpe12g00472 555 SMART sant 243 291 IPR001005 -
Bpe12g00472 555 Coils Coil 476 508 - -
Bpe12g00472 555 Gene3D - 27 112 IPR036388 -
Bpe12g00472 555 SUPERFAMILY Homeodomain-like 27 110 IPR009057 -
Bpe12g00472 555 Gene3D - 242 291 - -
Bpe12g00472 555 PANTHER SWI/SNF COMPLEX-RELATED 20 544 - -
Bpe12g00472 555 ProSiteProfiles SWIRM domain profile. 21 118 IPR007526 GO:0005515
Bpe12g00472 555 Pfam Myb-like DNA-binding domain 247 285 IPR001005 -
Bpe12g00472 555 SUPERFAMILY Homeodomain-like 242 292 IPR009057 -
Bpe12g00472 555 ProSiteProfiles SANT domain profile. 242 293 IPR017884 -
Bpe12g00472 555 Pfam SWIRM-associated region 1 463 538 IPR032451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00472 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - jre:108997615 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00478 Bpe-Chr10:12041357 Bpe12g00472 Bpe-Chr12:10485787 0 dispersed
Bpe12g00472 Bpe-Chr12:10485787 Bpe15g00871 Bpe-Chr15:18666462 3.94E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00472 Bpe_Chr12 FPKM 0.19464 0.448231 0.0 0.240371 0.0 0.0 0.0 0.186797 0.0 0.201759