Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00487 ATGGTTTCTACTAGAAGGAGTGGATCTCTTCCTGGAAGCAACAGTAAAAGACCCTCTTCTTCCTCGGAGGATAAGCCTCCATCTCCGAAGCGTCAGAAGGTATCTGAAAATGGCGGTACATCGGAGGTGCCGGGGCCTGGGGCGGAGAATTCTAAAGACTCGGTTTCGTTACCTGCTGTGGATCCCGGAGAACGTGAGCCGGAGGATGTTCAGATCGCCGGAAACGGCGGTGGAGATGGTGTTAGCGCTGTAAAAGGCCAGGCTGTGCAAACTGCTGTGGCCGTGGCCTCACCTGTAGCCGAGGGTACCACTCCGGTGATTGAAAAGCCAAGGAGTTCATTTTCGTCGTGGAGTTTGTATCCTCCTAAGCAAAACACAAATTTTGAGACTTCAACGCCATGGTGTAGGCTCCTCTCACAATTTGGGCCGAATCCAAACGTTCTCATTTGCCCTACTAATTTCACGATTGGATCGAGCAGAAGTTGTAATTTTCCATTGAAGGATCACACGATCAGTGGCACTTTATGCAAAATAAAGCACACCCAGAGGGAGGGAACTACTGTAGCCTTGCTAGAGAGTTCAGGGAGCAAGGGATCGGTGCTAGTAAATGGTGCAGTTGTAAAAAAGAATACCAGTTGTGTGCTTAACTCAGGCGATGAGGTGGTCTTTGGTGCTCTGGGGAACCATGCCTATATTTTCCAGCAACTTACGACTGACATTATGATAAAAGGTTCGGAGTCTCAGAATGGTGTTGGAAAATTTCTTCAGCTCGAAAGGAGGACAGGTGATCCCTCGGCTGTGGCCGGGGCTTCTATATTAGCATCTTTGTCAAGCCTTAGGCAAGATCTATCCCGTTGGAAGCCTCCTGCTCAGACGAGTAAAATCCATTCAGGTCTGGATTTGGCTTCTCATTCTGTTGTTCGCGATGCTACCGAACTTGAAATTGATGGTCCTGAAGCCAACTCCACTCCAGATTCAGGGGGCGATAAAGCTGTGGAGAGGGAACCACTCAACAAAAGTCTTTCTCCTGACAACAACATGGACTCTGGCTTAGAGGCAGGCAATGTAAAACTTTCTGGGGTATTGGAAGAAAGAAACGAGTGGACGGGAGATTTGCAGCCAGCATCAACTCCAGGCATGTCTTTGCGGTGTCAAGCGTTTAGAGATGACATTCATGCTGGAATAGTTGATGGCAGAAACTTGAAAGTTTCATTTGAAAACTTTCCTTACTATTTGAGTGAAAATACCAAAAATGTGCTGATTGCAGCTTCTATCATCCACTTAAAGCATAAAGAACATGCAAAGTATACATCAGATCTGACTACAGTGAACCCACGAATTTTACTTTCCGGTCCCGCAGGATCAGAAATATATCAGGAGATGCTATCGGAGGCACTAGCTAATTACTTTGGGGCTAAGTTGCTCATATTTGATAGCCATTCGTTTTTGGGTGGTTTATCGTCGAAAGAAGCAGAGCTAGTGAAGGATGGAGGTAATGCAGAAAAACCTTGTAACTGTGCTAAAGAAAGTACGGTATCTACTGACTTGGCTAAGAACATGGATCTATCTAATGCGGAAGAAGACACACCAAGCTCTTCAAATGGTCCCTTCGAAGGTCTGGACTCACAATCAAAGATGGATGCAGATACCATGCCTTCTTCCTCAGTAACATCCAAAAAGTACTTTTTCAAGATTGGTGACAGAGTTAGATTTATGGGTTCAATTGGTGGTAGTTTGTATCCAGCTACATCTTCTTTGAGCTTCTATCGTGACGTGTCAAAAGTAATACATTGTTCATGTTATAGAGGGCCGCCCATTGGTACTCGTGGGAAGGTTTCGTTAACTTTTGAAGACAACTCTTTGTCAAAGATCGGGATAAAGTTTGATAAACCCATACCTGATGGGGTGGATCTTGGGGGTGTCTGTGAAGGAGGCTATGGGTTCTTTTGCAATGCTTCTGATCTTCGTTTAGAGAACTCTGGTCCAGACGAATTGGACAAGTTACTCATTGATACATTGTTTGAGGAAGTGAATACTGTGAGCAGAAGTTCTCCATTTATCTTGTTCATGAAAGACGCTGAGAAATCTCTGGTAGGAAATTCAGATTCATACTCTACTTTTAAAAGTAGACTAGAGAAGCTTCCGGATAATGTCATAGTAATTGTTTCTAACACTCATACGGACAATCGCAAGGAGAAGTCACATCCTGGTGGTCTGCTTTTTACAAAGTTTGGCAGCAATCAAACTGCTCTTCTTGATTTAGCTTTCCCGGATAGTTTTGGAAGATTGCATGACAAGGGGAAGGAAGTTCCAAAAGCAACAAAGCTACTGGCCAAACTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGACGCACTGCTTGTATCTTGGAAGCACCAACTTGATCGAGATATGGAAACCCTGAAAATGAAGGGAAATCTGAATCACTTGCGAACTGTCTTGAGTCGGAGTGGAATGGATTGTGAAGGACTTGATACTCTATGCATAAAGGATCAAACCCTTACAAATGAGAGTGCAGAGAAGGTAGTCGGATGGGCACTAAGCCATCATTTAATGAACAATGCTCATGCTGATACCGATGCTCGGCTTGTCTTGTCTAGTGAGAGCATCCAGTACGCTGTTGGATTATTACATTCTATCCAGAATGAATCTAAGAGCTTAAAGAAGTCTCTTAAGGATGTTGTCACTGAAAACGAATTTGAGAAAAGGCTCTTAGCTGATGTTATTCCACCAACTGACATTGGAGTCACATTTGACGATATTGGAGCTCTGGAAAATGTGAAAGATACTTTGAAGGAATTAGTGATGCTCCCATTGCAAAGGCCTGAACTATTCTGCAAGGGGCAACTCACAAAGCCATGCAAAGGGATACTATTATTTGGTCCCCCTGGTACTGGTAAGACAATGCTAGCAAAAGCTGTTGCCACTGAAGCAGGTGCAAATTTTATTAACATTTCTATGTCTAGCATCACATCCAAGTGGTTTGGCGAGGGTGAAAAGTACGTGAAGGCTGTCTTCTCATTAGCTAGCAAAATTGCTCCTAGCGTCATATTTGTCGATGAAAATTTGTGTGTAACTGCTGCTCACCGGCCAATCAAAGAGATATTAGAAAAAGAAAAGAAGGACAGTGCCACAGCGCTGGCTGAAGGTCGGCCTGTTCCGGCATTAAGTGGGAGTGCTGATATACGACCTCTAAACATGGAGGATTTCAAATACGCTCATGAACGGGTATGTGCGAGTGTATCGTCGGAGTCAGTAAACATGGCAGAGCTTGTACAATGGAATGAGCTATATGGTGAGGGGGGTTCAAGAAGAAAGAGAGCTCTGAGTTACTTCATGTGA 3369 44.14 MVSTRRSGSLPGSNSKRPSSSSEDKPPSPKRQKVSENGGTSEVPGPGAENSKDSVSLPAVDPGEREPEDVQIAGNGGGDGVSAVKGQAVQTAVAVASPVAEGTTPVIEKPRSSFSSWSLYPPKQNTNFETSTPWCRLLSQFGPNPNVLICPTNFTIGSSRSCNFPLKDHTISGTLCKIKHTQREGTTVALLESSGSKGSVLVNGAVVKKNTSCVLNSGDEVVFGALGNHAYIFQQLTTDIMIKGSESQNGVGKFLQLERRTGDPSAVAGASILASLSSLRQDLSRWKPPAQTSKIHSGLDLASHSVVRDATELEIDGPEANSTPDSGGDKAVEREPLNKSLSPDNNMDSGLEAGNVKLSGVLEERNEWTGDLQPASTPGMSLRCQAFRDDIHAGIVDGRNLKVSFENFPYYLSENTKNVLIAASIIHLKHKEHAKYTSDLTTVNPRILLSGPAGSEIYQEMLSEALANYFGAKLLIFDSHSFLGGLSSKEAELVKDGGNAEKPCNCAKESTVSTDLAKNMDLSNAEEDTPSSSNGPFEGLDSQSKMDADTMPSSSVTSKKYFFKIGDRVRFMGSIGGSLYPATSSLSFYRDVSKVIHCSCYRGPPIGTRGKVSLTFEDNSLSKIGIKFDKPIPDGVDLGGVCEGGYGFFCNASDLRLENSGPDELDKLLIDTLFEEVNTVSRSSPFILFMKDAEKSLVGNSDSYSTFKSRLEKLPDNVIVIVSNTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDKGKEVPKATKLLAKLFPNKVTIHMPQDDALLVSWKHQLDRDMETLKMKGNLNHLRTVLSRSGMDCEGLDTLCIKDQTLTNESAEKVVGWALSHHLMNNAHADTDARLVLSSESIQYAVGLLHSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDENLCVTAAHRPIKEILEKEKKDSATALAEGRPVPALSGSADIRPLNMEDFKYAHERVCASVSSESVNMAELVQWNELYGEGGSRRKRALSYFM 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10672388 10682452 + Bpe005750.2 Bpe12g00487 112500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00487 1122 Gene3D - 924 1030 IPR027417 -
Bpe12g00487 1122 CDD AAA 964 1030 - -
Bpe12g00487 1122 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 1031 1122 - -
Bpe12g00487 1122 MobiDBLite consensus disorder prediction 524 554 - -
Bpe12g00487 1122 Pfam FHA domain 155 224 IPR000253 GO:0005515
Bpe12g00487 1122 MobiDBLite consensus disorder prediction 1 83 - -
Bpe12g00487 1122 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 1030 - -
Bpe12g00487 1122 Pfam ATPase family associated with various cellular activities (AAA) 966 1030 IPR003959 GO:0005524|GO:0016887
Bpe12g00487 1122 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1031 1122 - -
Bpe12g00487 1122 Gene3D - 133 241 - -
Bpe12g00487 1122 MobiDBLite consensus disorder prediction 1 22 - -
Bpe12g00487 1122 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 1030 - -
Bpe12g00487 1122 Gene3D - 1031 1109 - -
Bpe12g00487 1122 SMART AAA_5 962 1087 IPR003593 -
Bpe12g00487 1122 MobiDBLite consensus disorder prediction 313 352 - -
Bpe12g00487 1122 CDD FHA 134 234 IPR000253 GO:0005515
Bpe12g00487 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1030 IPR027417 -
Bpe12g00487 1122 SUPERFAMILY SMAD/FHA domain 133 232 IPR008984 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00487 - - - csv:101214766 1499.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00884 Bpe12g00487 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00458 Bpe-Chr10:11912883 Bpe12g00487 Bpe-Chr12:10672388 6.74E-36 dispersed
Bpe12g00487 Bpe-Chr12:10672388 Bpe07g01027 Bpe-Chr7:15826275 3.90E-41 dispersed
Bpe12g00487 Bpe-Chr12:10672388 Bpe07g00884 Bpe-Chr7:14929705 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00487 Bpe_Chr12 FPKM 2.428251 1.514175 1.622514 1.503436 0.0 0.407016 0.969127 1.926883 1.727645 2.777694