Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00497 ATCATGTCGAGTGCAAGTGTTTGGAGCAAAGAAGAAGACAAAGCTTTTGAAAATGCAATAGCAATGCACTGGGTTAGGGAGGAAGATTCAGAGGAGCAATGGCAGAAGATAGGTTCAATGGTCCCAACAAAAACAATGGACGACTTGAAGCAACACTATCAAATGTTAGTGGAGGATGTGGCTGCCATTGCCGCAGGTCAAATACCTATCCCGAACTATGTTGGGGAGGAAGCTACTTCGTCGAACAAAGACCATCACAATTCGGTTTCTAACGGTTCAATGGCAGCTGCCGATAAAAAATGGTTGGCCGGACTGGCAAATGACTCGGTCGGTCATGGAGGGAAAGGAGGATCGAGGTCTGAACAAGAACGACGAAAGGGGATTCCATGGACAGAAGAAGAGCACAGGTTGTTTTTACTGGGTCTAGACAAGTTTGGAAAGGGAGATTGGAGAAGCATTTCAAGGAATTTTGTCATTTCAAGGACCCCTACCCAAGTAGCTAGCCATGCACAAAAGTACTTTATAAGATTGAACTCAATAAACAGAGATAGAAGAAGATCAAGTATTCATGATATTACCAGTGTCAACAATGGAGATGTCTCCTCCCATCAAGCACAGATCACAGGCCAACAATCCGGACTAAACCCATCAGCTGGAACCATCCGCCCACCGCCAGTGAAGCATGGAGCTCAGCCTCATATGACTGGTATAGGGATGTATGGAACTCCGATGGGTCACCCTGTAGCCGCTCCTCCTGGGCATATGGCATCGGCTGTTGGGACTCCGGTGATGCTTCCAACAGGACATCATCCTCATCCATCCTATGTTTTACCTGTTGCTTATCCAATGCCACCTTCAACAATGCATCAG 870 46.67 IMSSASVWSKEEDKAFENAIAMHWVREEDSEEQWQKIGSMVPTKTMDDLKQHYQMLVEDVAAIAAGQIPIPNYVGEEATSSNKDHHNSVSNGSMAAADKKWLAGLANDSVGHGGKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSINRDRRRSSIHDITSVNNGDVSSHQAQITGQQSGLNPSAGTIRPPPVKHGAQPHMTGIGMYGTPMGHPVAAPPGHMASAVGTPVMLPTGHHPHPSYVLPVAYPMPPSTMHQ 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10783517 10784583 - Bpe024895 Bpe12g00497 112510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00497 290 ProSiteProfiles SANT domain profile. 130 178 IPR017884 -
Bpe12g00497 290 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Bpe12g00497 290 Gene3D - 2 70 - -
Bpe12g00497 290 SMART sant 4 59 IPR001005 -
Bpe12g00497 290 SMART sant 126 176 IPR001005 -
Bpe12g00497 290 ProSiteProfiles Myb-like domain profile. 122 174 IPR001005 -
Bpe12g00497 290 PANTHER TRANSCRIPTION FACTOR MYBS1 2 289 - -
Bpe12g00497 290 Pfam Myb-like DNA-binding domain 129 174 IPR001005 -
Bpe12g00497 290 Pfam Myb-like DNA-binding domain 7 56 IPR001005 -
Bpe12g00497 290 CDD SANT 8 57 IPR001005 -
Bpe12g00497 290 PANTHER TRANSCRIPTION FACTOR KUA1 2 289 - -
Bpe12g00497 290 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Bpe12g00497 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 126 176 IPR006447 GO:0003677
Bpe12g00497 290 MobiDBLite consensus disorder prediction 106 127 - -
Bpe12g00497 290 Gene3D - 128 181 - -
Bpe12g00497 290 SUPERFAMILY Homeodomain-like 124 179 IPR009057 -
Bpe12g00497 290 CDD SANT 129 174 IPR001005 -
Bpe12g00497 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 178 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00497 - - - qsu:112024710 441.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00811 Bpe12g00497 CCT
Bpe12g00497 Bpe15g00619 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01622 Bpe-Chr4:22443910 Bpe12g00497 Bpe-Chr12:10783517 1.02E-25 dispersed
Bpe04g01813 Bpe-Chr4:23530361 Bpe12g00497 Bpe-Chr12:10783517 1.55E-53 dispersed
Bpe11g00865 Bpe-Chr11:6388504 Bpe12g00497 Bpe-Chr12:10783517 2.71E-54 dispersed
Bpe12g00497 Bpe-Chr12:10783517 Bpe01g00587 Bpe-Chr1:3822017 1.01E-31 dispersed
Bpe12g00571 Bpe-Chr12:11524788 Bpe12g00497 Bpe-Chr12:10783517 8.81E-37 dispersed
Bpe15g00619 Bpe-Chr15:17053693 Bpe12g00497 Bpe-Chr12:10783517 1.33E-33 dispersed
Bpe12g00497 Bpe-Chr12:10783517 Bpe08g01392 Bpe-Chr8:14875862 1.10E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22201 PF00249 Myb_DNA-binding 6.80E-08 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00497 Bpe_Chr12 FPKM 16.34564 18.480013 13.682688 14.739774 11.091329 10.101141 10.109342 16.014803 16.471533 18.107761