Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00498 ATGGCTTGGAGGAGTGTGTTGAAGGCTTTGCAGGCACTGGTGGCCCACAGTTCTCTGTTTTGTTTCACGCTTCTGCTCGTTTTCAAGCTCGATCACGTCGTGTTCTATAGTTGGTGGATAATATTTTTGCCTCTGTGGGCATTTCACGCAGTCGTTGCTCGAGGAAGATTCTCATTACCTGCTCCATCGGTTCCACATAATCGTAATTGGGCACCTTGCCATGCAGTTGTTGCCACGACCTTGCTTATCGCATTTGAATTGCTTCTCTGTATATATCTTGAGAGCATTTATGTACATGGTTTTGCAGCAGTCAGTTTGAAGATTGTTTTTCTTCCATTATTGGCATTTGAAATGACTATTCTAATTGATAATTTCAGAATGTGTAGGGCTCCTATGCTGGGAGATCATGAAGGCTTGAGCGATGAGGCTATATGGGAAACTCTTACACACATCTGGGTGGTGATTTCCATGATCTTCTTTGTCGCTGCTACAATCTTCACCCTCCTGAAGCTCTGTGGTGATGTTGGTGCTCTCGGTTGGTGGGACTTATTTATAAATTTTGGTATTGCTGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAACCCTATTATTCATAGAAATTCTTCCAGTAGAGAAGCCACTTCTTCTTCTTCTTCGATTATTAGATATCTAGATTGGGGTAGCGGATTAATACTCTCCCCCCAGCAAGATGAGCAGCAAGATAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATAATGAAACTTCTGATTATCGGTTTTCAAATCCTTCTTTGCATGCGTCTTGAGGGAACACCTGCCAATGCTAAATATATATCAATCCCTGCTCTTTTTTCACCTCTTTTCCTGCTGCAAGGTGCTGGCATATTATTTTCGGCATCTATGTTGGTGGAGAGAATTGTTCTTCTTCGACGAAGTGGATTTGGCAATGGGTTGTATTTCAGATTTTCTTCAAAAGCTAATGAATGTTTTGAGTTCTTTCACCGTGGATCGAGGCTTTTGGGTTGGTGGTCAATTGACGAAGGAAGTTGTGAGGAACTGGCCCGAATATTTCACGACAGAGCTTCCGGGTATAATACTTTCTCTGGTTATCCTCCTGAGATTGTGAAAAAAATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGAGACTTCAAGCTGCTCTTGGCGAGCAGACAGAAATTACGAAATATAGTCAGCTCGAGTATGAAAAACTTCAGAATGAGAAGGTGTTATGTAGAGTTTGCTTCGAGGGAGAGATTAGCATCGTCCTTCTTCCATGCAGGCATAGAATACTTTGCTGCGTGTGCTCGGAGAAGTGTAAAAAGTGCCCAATTTGTCGAGTGTCTATTGAAAAGCTTTTACCGGTATATGACGTTTAG 1407 42.64 MAWRSVLKALQALVAHSSLFCFTLLLVFKLDHVVFYSWWIIFLPLWAFHAVVARGRFSLPAPSVPHNRNWAPCHAVVATTLLIAFELLLCIYLESIYVHGFAAVSLKIVFLPLLAFEMTILIDNFRMCRAPMLGDHEGLSDEAIWETLTHIWVVISMIFFVAATIFTLLKLCGDVGALGWWDLFINFGIAECFAFLVCTKWSNPIIHRNSSSREATSSSSSIIRYLDWGSGLILSPQQDEQQDRMCGLQDIGGHIMKLLIIGFQILLCMRLEGTPANAKYISIPALFSPLFLLQGAGILFSASMLVERIVLLRRSGFGNGLYFRFSSKANECFEFFHRGSRLLGWWSIDEGSCEELARIFHDRASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQLEYEKLQNEKVLCRVCFEGEISIVLLPCRHRILCCVCSEKCKKCPICRVSIEKLLPVYDV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10791233 10796763 - Bpe005760.1 Bpe12g00498 112511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00498 468 Pfam Zinc finger, C3HC4 type (RING finger) 418 461 - -
Bpe12g00498 468 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 468 - -
Bpe12g00498 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 467 IPR013083 -
Bpe12g00498 468 SUPERFAMILY RING/U-box 411 463 - -
Bpe12g00498 468 Pfam Transmembrane Fragile-X-F protein 29 293 IPR019396 -
Bpe12g00498 468 ProSiteProfiles Zinc finger RING-type profile. 421 456 IPR001841 -
Bpe12g00498 468 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 468 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00730 Bpe12g00498 CCT
Bpe07g00730 Bpe12g00498 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02288 Bpe-Chr2:23648917 Bpe12g00498 Bpe-Chr12:10791233 0 dispersed
Bpe06g00612 Bpe-Chr6:16923612 Bpe12g00498 Bpe-Chr12:10791233 4.24E-06 dispersed
Bpe12g00498 Bpe-Chr12:10791233 Bpe12g00090 Bpe-Chr12:648633 9.45E-08 dispersed
Bpe12g00498 Bpe-Chr12:10791233 Bpe07g00730 Bpe-Chr7:13839610 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00498 - - tcc:18604055 788.104