Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00518 GCTTATGATCCGTTGGATCCGAACGGAAACATAACGATCAAATGGGACATAATTTCTTGGACGGCAGATGGTTATGTAGCTACCGTTACGATGAACAACTTTCAGATGTATCGACACATAATGACTCCCGGATGGACTCTATCCTGGTCATGGGCTAAAAAAGAAGTAATATGGTCAATGGTGGGAGCTCAAACCACAGAGCAAGGAGATTGTTCAAAGTTCAAAGGAAATGTACCCCATTGCTGTAAGAAAACTCCGACTGTTGTCGATTTGCTTCCTGGCGTTCCATACAATCAACAATTCTCCAATTGCTGTAAAGGCGGTGTTTTGTCGTCTTGGGGTCAAGATCCGATAGCCTCAGTCTCGGCTTTTCAGGTGAGCGTTGGACTGGCCGGGACTTCGAATAAAACAGTGAAATTGCCAAAAAATTTCACTTTGTTTGGTCCTGGACCTGGATATACTTGTGGCCCGGCAAATGTCGTTCCATCTACGGTTTTCCTCACACCTGATCGGAGACGGAAAACTCAAGCATTAATGACATGGAATGTGACCTGTACTTATTCGCAGTTTCTGTCCTCGAAGAACCCGAGCTGCTGCGTTTCGTTTTCATCTTTTTACAACGATACCATCACTCCTTGCCCGTCTTGTGCATGTGGTTGCCAAAACAAAAAAAACTGTGTCACGAGCTCAAAGCTTGTACACAAGGCGGGGATAAACACTCCTAAAAAAGATAATACGCCTTTACTACAATGCACGCACCACATGTGTCCGATACGTGTTCATTGGCACGTAAAGCTCAACTACAAGGATTATTGGAGGGTGAAAATCGCTATCACAAACTTCAACTATCGATTGAACTACACTCAATGGACACTTGCAGTGCAACACCCGAATCTCAACAATGTAACCCAAGTATTTAGCTTCGATTACAAGCCACTTGTTCCCTACGAAGCCATTAACGATACTGGCATGTTTTATGGCATGAAATTCTACAATGACTTGTTAATGGAAGCCGGGCCGTCAGGAAATGTGCAGTCTGAGATACTTCTGAAGAAGGACGACGAAACATTTACCTTTAAGCAGGGATGGGCATTTCCTCGGAAAATTTACTTCAACGGAGACGAATGTAAGCTGCCTTCGCCCGACGCCTATCCGTTTCTCCCAAACTCAGCTCCGGCAGGATCTATTGCAGTCACAAAAGTGGTGATCTACTTGTTTCTGATGTTGCTCTTCTTATGGTGA 1242 44.44 AYDPLDPNGNITIKWDIISWTADGYVATVTMNNFQMYRHIMTPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVLSSWGQDPIASVSAFQVSVGLAGTSNKTVKLPKNFTLFGPGPGYTCGPANVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLSSKNPSCCVSFSSFYNDTITPCPSCACGCQNKKNCVTSSKLVHKAGINTPKKDNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRLNYTQWTLAVQHPNLNNVTQVFSFDYKPLVPYEAINDTGMFYGMKFYNDLLMEAGPSGNVQSEILLKKDDETFTFKQGWAFPRKIYFNGDECKLPSPDAYPFLPNSAPAGSIAVTKVVIYLFLMLLFLW 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11027190 11029588 + Bpe005781.1 Bpe12g00518 112531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00518 413 PANTHER PROTEIN COBRA 1 409 IPR006918 GO:0010215|GO:0031225
Bpe12g00518 413 PANTHER COBRA-LIKE PROTEIN 4 1 409 - -
Bpe12g00518 413 PIRSF COBRA 1 413 IPR006918 GO:0010215|GO:0031225
Bpe12g00518 413 Pfam COBRA-like protein 25 188 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00187 Bpe-Chr9:1304989 Bpe12g00518 Bpe-Chr12:11027190 2.49E-36 dispersed
Bpe11g01181 Bpe-Chr11:8759675 Bpe12g00518 Bpe-Chr12:11027190 0 dispersed
Bpe12g00108 Bpe-Chr12:775393 Bpe12g00518 Bpe-Chr12:11027190 1.34E-132 dispersed
Bpe12g00518 Bpe-Chr12:11027190 Bpe11g00047 Bpe-Chr11:339267 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00518 - - cmo:103494059 802.742