Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00518 GCTTATGATCCGTTGGATCCGAACGGAAACATAACGATCAAATGGGACATAATTTCTTGGACGGCAGATGGTTATGTAGCTACCGTTACGATGAACAACTTTCAGATGTATCGACACATAATGACTCCCGGATGGACTCTATCCTGGTCATGGGCTAAAAAAGAAGTAATATGGTCAATGGTGGGAGCTCAAACCACAGAGCAAGGAGATTGTTCAAAGTTCAAAGGAAATGTACCCCATTGCTGTAAGAAAACTCCGACTGTTGTCGATTTGCTTCCTGGCGTTCCATACAATCAACAATTCTCCAATTGCTGTAAAGGCGGTGTTTTGTCGTCTTGGGGTCAAGATCCGATAGCCTCAGTCTCGGCTTTTCAGGTGAGCGTTGGACTGGCCGGGACTTCGAATAAAACAGTGAAATTGCCAAAAAATTTCACTTTGTTTGGTCCTGGACCTGGATATACTTGTGGCCCGGCAAATGTCGTTCCATCTACGGTTTTCCTCACACCTGATCGGAGACGGAAAACTCAAGCATTAATGACATGGAATGTGACCTGTACTTATTCGCAGTTTCTGTCCTCGAAGAACCCGAGCTGCTGCGTTTCGTTTTCATCTTTTTACAACGATACCATCACTCCTTGCCCGTCTTGTGCATGTGGTTGCCAAAACAAAAAAAACTGTGTCACGAGCTCAAAGCTTGTACACAAGGCGGGGATAAACACTCCTAAAAAAGATAATACGCCTTTACTACAATGCACGCACCACATGTGTCCGATACGTGTTCATTGGCACGTAAAGCTCAACTACAAGGATTATTGGAGGGTGAAAATCGCTATCACAAACTTCAACTATCGATTGAACTACACTCAATGGACACTTGCAGTGCAACACCCGAATCTCAACAATGTAACCCAAGTATTTAGCTTCGATTACAAGCCACTTGTTCCCTACGAAGCCATTAACGATACTGGCATGTTTTATGGCATGAAATTCTACAATGACTTGTTAATGGAAGCCGGGCCGTCAGGAAATGTGCAGTCTGAGATACTTCTGAAGAAGGACGACGAAACATTTACCTTTAAGCAGGGATGGGCATTTCCTCGGAAAATTTACTTCAACGGAGACGAATGTAAGCTGCCTTCGCCCGACGCCTATCCGTTTCTCCCAAACTCAGCTCCGGCAGGATCTATTGCAGTCACAAAAGTGGTGATCTACTTGTTTCTGATGTTGCTCTTCTTATGGTGA 1242 44.44 AYDPLDPNGNITIKWDIISWTADGYVATVTMNNFQMYRHIMTPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVLSSWGQDPIASVSAFQVSVGLAGTSNKTVKLPKNFTLFGPGPGYTCGPANVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLSSKNPSCCVSFSSFYNDTITPCPSCACGCQNKKNCVTSSKLVHKAGINTPKKDNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRLNYTQWTLAVQHPNLNNVTQVFSFDYKPLVPYEAINDTGMFYGMKFYNDLLMEAGPSGNVQSEILLKKDDETFTFKQGWAFPRKIYFNGDECKLPSPDAYPFLPNSAPAGSIAVTKVVIYLFLMLLFLW 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11027190 11029588 + Bpe005781.1 Bpe12g00518 112531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00518 413 PANTHER PROTEIN COBRA 1 409 IPR006918 GO:0010215|GO:0031225
Bpe12g00518 413 PANTHER COBRA-LIKE PROTEIN 4 1 409 - -
Bpe12g00518 413 PIRSF COBRA 1 413 IPR006918 GO:0010215|GO:0031225
Bpe12g00518 413 Pfam COBRA-like protein 25 188 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00518 - - - cmo:103494059 802.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00187 Bpe-Chr9:1304989 Bpe12g00518 Bpe-Chr12:11027190 2.49E-36 dispersed
Bpe11g01181 Bpe-Chr11:8759675 Bpe12g00518 Bpe-Chr12:11027190 0 dispersed
Bpe12g00108 Bpe-Chr12:775393 Bpe12g00518 Bpe-Chr12:11027190 1.34E-132 dispersed
Bpe12g00518 Bpe-Chr12:11027190 Bpe11g00047 Bpe-Chr11:339267 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00746 BCT 48 437 COBRA Gene Family AT5G60920 82.2 8.2e-211 729.6
Bpe11g01181 . 48 441 COBRA Gene Family AT5G60920 75.9 1.7e-195 678.7
Bpe11g00048 . 24 418 COBRA Gene Family AT5G60920 74.1 1.8e-194 675.2
Bpe11g00047 . 37 434 COBRA Gene Family AT5G60920 67.7 3.1e-178 621.3
Bpe12g00518 . 13 411 COBRA Gene Family AT5G60920 66.7 3.3e-175 611.3
Bpe05g00746 CCT,ECH 17 391 COBRA Gene Family AT5G60920 51.8 7.6e-124 440.7
Bpe07g00746 BCT 18 450 COBRA Gene Family AT3G02210 72.7 5.3e-203 703.7
Bpe11g00048 . 10 418 COBRA Gene Family AT3G02210 75.1 7.2e-200 693.3
Bpe11g01181 . 8 454 COBRA Gene Family AT3G02210 70.2 4.7e-199 690.6
Bpe12g00518 . 1 396 COBRA Gene Family AT3G02210 68.1 2.3e-174 608.6
Bpe11g00047 . 1 433 COBRA Gene Family AT3G02210 63.0 4.0e-174 607.8
Bpe05g00746 CCT,ECH 4 417 COBRA Gene Family AT3G02210 51.4 2.1e-130 462.6
Bpe11g01181 . 28 450 COBRA Gene Family AT3G29810 74.4 2.7e-199 691.4
Bpe07g00746 BCT 29 435 COBRA Gene Family AT3G29810 75.8 7.8e-199 689.9
Bpe11g00048 . 11 425 COBRA Gene Family AT3G29810 72.7 1.9e-192 668.7
Bpe11g00047 . 18 416 COBRA Gene Family AT3G29810 66.2 7.3e-173 603.6
Bpe12g00518 . 1 409 COBRA Gene Family AT3G29810 65.6 4.7e-172 600.9
Bpe05g00746 CCT,ECH 4 399 COBRA Gene Family AT3G29810 54.0 2.0e-130 462.6
Bpe12g00518 . 1 320 COBRA Gene Family AT5G15630 86.3 3.8e-177 617.5
Bpe11g00047 . 23 345 COBRA Gene Family AT5G15630 84.5 8.4e-177 616.3
Bpe07g00746 BCT 31 358 COBRA Gene Family AT5G15630 73.0 9.7e-149 523.1
Bpe11g00048 . 10 335 COBRA Gene Family AT5G15630 66.4 1.2e-141 499.6
Bpe11g01181 . 31 359 COBRA Gene Family AT5G15630 67.1 2.0e-141 498.8
Bpe05g00746 CCT,ECH 5 322 COBRA Gene Family AT5G15630 50.2 3.1e-94 342.0
Bpe07g00746 BCT 16 224 COBRA Gene Family AT5G60950 57.6 5.2e-65 244.2
Bpe11g01181 . 24 224 COBRA Gene Family AT5G60950 54.5 9.2e-62 233.4
Bpe11g00048 . 20 200 COBRA Gene Family AT5G60950 56.9 7.8e-61 230.3
Bpe11g00047 . 15 213 COBRA Gene Family AT5G60950 54.5 1.1e-57 219.9
Bpe12g00518 . 9 189 COBRA Gene Family AT5G60950 56.9 6.8e-57 217.2
Bpe05g00746 CCT,ECH 5 417 COBRA Gene Family AT1G09790 56.1 6.5e-145 510.8
Bpe07g00746 BCT 21 427 COBRA Gene Family AT1G09790 53.2 5.1e-134 474.6
Bpe11g01181 . 20 429 COBRA Gene Family AT1G09790 52.4 3.7e-132 468.4
Bpe11g00048 . 11 406 COBRA Gene Family AT1G09790 53.1 6.3e-132 467.6
Bpe12g00518 . 1 391 COBRA Gene Family AT1G09790 54.7 1.8e-131 466.1
Bpe11g00047 . 25 416 COBRA Gene Family AT1G09790 53.2 3.1e-131 465.3
Bpe05g00822 . 39 656 COBRA Gene Family AT4G16120 65.4 1.8e-255 878.6
Bpe04g01104 CCT,ECH 33 630 COBRA Gene Family AT4G16120 64.8 2.5e-249 858.2
Bpe09g00187 BCT 38 634 COBRA Gene Family AT4G16120 56.1 4.6e-211 731.1
Bpe08g01136 BCT 1 541 COBRA Gene Family AT4G16120 56.8 1.0e-194 676.8
Bpe05g00822 . 17 656 COBRA Gene Family AT3G16860 62.1 1.6e-240 828.9
Bpe04g01104 CCT,ECH 11 642 COBRA Gene Family AT3G16860 61.2 3.4e-235 811.2
Bpe09g00187 BCT 35 648 COBRA Gene Family AT3G16860 52.5 1.0e-199 693.3
Bpe08g01136 BCT 1 548 COBRA Gene Family AT3G16860 55.8 1.2e-184 643.3
Bpe05g00822 . 11 632 COBRA Gene Family AT5G49270 59.9 1.7e-234 808.9
Bpe04g01104 CCT,ECH 1 629 COBRA Gene Family AT5G49270 57.9 1.3e-229 792.7
Bpe09g00187 BCT 34 634 COBRA Gene Family AT5G49270 53.5 7.3e-201 697.2
Bpe08g01136 BCT 1 545 COBRA Gene Family AT5G49270 53.3 9.9e-182 633.6
Bpe09g00187 BCT 6 644 COBRA Gene Family AT3G20580 63.8 1.1e-255 879.4
Bpe08g01136 BCT 1 565 COBRA Gene Family AT3G20580 61.8 1.9e-217 752.3
Bpe05g00822 . 35 636 COBRA Gene Family AT3G20580 54.7 5.5e-204 707.6
Bpe04g01104 CCT,ECH 29 630 COBRA Gene Family AT3G20580 53.5 1.3e-200 696.4
Bpe09g00187 BCT 9 657 COBRA Gene Family AT4G27110 60.2 7.5e-238 820.1
Bpe08g01136 BCT 1 569 COBRA Gene Family AT4G27110 62.2 6.4e-213 737.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00518 Bpe_Chr12 FPKM 18.18568 20.360029 25.745878 24.410065 37.025051 38.112083 36.970024 33.096714 31.820868 32.101604