Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00519 ATGGCGCGATCTCAGGCTCTGCAACTTCGGAAGCTCCTGCTCCGATCCTTCACTTCTTCCGCTTCACCTTCTACTTCCAATCAGCACCCTCAGTTGCTTCTTCTTCATCGAAATCTTTCTTATCCATCCACTCCTTTACGCCGTTTTCTTCCTTTTCCATCGCTGCCTCACCTCTCCATTGTTAAACCATTCTCCACCGAACCCGGCGACCAAGTTCCTGATAAAATTTCCATCTCTCTCTCCGAGGAACTGCTTAAAGAACCGAATACGGACCCTCTTTCTGTAGCACAACGCCTCCATCTTTGCTTCTCACACATTACGCCTAATCCTAATCTGGTTCTTCAGACACTCAATCTCTCCTCCGAAGCTGGCCGTACAGCTCTAGGGTTTAACGAGTGGCTAAGTTCGAACCCTAAGTTTCAACATACTGATGAGACGATCTCGTATTTTGTCGACTACTTCGGACGGAGAAAAGATTTCAAAGCGACCCATGAAGTTCTAGTGAGTGCTATAGGGGTTAGTGGAGCTAAAACCTTGGAATCGGCCATTGATCGGCTCGTTCGAGCTGGGAGACATACGCAAGCAGTATCTTTTTTTGAGAAAATGGAAACCGATTATGGACTTAAACGTGGTAAAGAATCGCTTAGAGTTGTCGTCGAGAAGCTTTGTGAAAATGGCTACGCCAGCCATGCGGAGAAAATGGTAAAAAACTTAGCTAATGAGTTCTTTCCTGATGAAACTATATGTGATTTGTTGATCAAAGGATGGTGTGTTGATGGGAAGTTTGATGAGGCTAAAAGGTTAGCTGGTGAAATGTATAGAGGTGGGTTTGAGATAGGGATAGTGGCTTATAATTCGATTCTTGATTGTGTTTGTAAGCTTTGTAGGAAAAAGGATCCTTTTCGACTTCACTCCGAAGCCGAGAAGGTGTTGTTAGAAATGGATTTTCATGGTGTTCCAAGAAATGTGGCTACCTTCAATGTGTTAATTACCAATTTGTGTAAGATTAGGAAAACAGAGGATGCATTGAATTTGTTCCACAAAATGGGAGATTGGAATTGCCATCCCAACGAAGAGACTTTTCTTGTGTTGATCAGAAGTTTGTATCAGGCAGCTAGAGTTGGAGAAGGAGATGAAATGATTGATAGAATGAAATCTGCAGGGTATGGAGATGCTCTTGATAAGAAGAATTATTATGGGTTTTTGAAGATTTTGTGTGGGATTGAGAGGATTAGTCACGCACTAAGTGTTTTTGCAAAGATGAAAAAAGATGGCTGCAAACCAGGAATTAAAACTTACGACTTGTTGATGGGGAAATTATGTGCTCATAATCACGTCGATAAAGCAAATTCCCTATTCAGAGAAGCTCAAAAAAGGGGAATTTCTGTGGTTCCCAAAGAATATAGGGTGGATCCACGATATGTAAAGAAGAAGAAGGTTAAGAAGATAGAAAAGAAGAGGGAGACATTGCCTGAGAAAATGGCAAGGAAAAGGAGAAAGCTGAAGCAAATTCGACTAAGTTTTGTGAAGAAGCCAAAACGAGGGATGCGTCGAGCCTTCTAA 1563 42.16 MARSQALQLRKLLLRSFTSSASPSTSNQHPQLLLLHRNLSYPSTPLRRFLPFPSLPHLSIVKPFSTEPGDQVPDKISISLSEELLKEPNTDPLSVAQRLHLCFSHITPNPNLVLQTLNLSSEAGRTALGFNEWLSSNPKFQHTDETISYFVDYFGRRKDFKATHEVLVSAIGVSGAKTLESAIDRLVRAGRHTQAVSFFEKMETDYGLKRGKESLRVVVEKLCENGYASHAEKMVKNLANEFFPDETICDLLIKGWCVDGKFDEAKRLAGEMYRGGFEIGIVAYNSILDCVCKLCRKKDPFRLHSEAEKVLLEMDFHGVPRNVATFNVLITNLCKIRKTEDALNLFHKMGDWNCHPNEETFLVLIRSLYQAARVGEGDEMIDRMKSAGYGDALDKKNYYGFLKILCGIERISHALSVFAKMKKDGCKPGIKTYDLLMGKLCAHNHVDKANSLFREAQKRGISVVPKEYRVDPRYVKKKKVKKIEKKRETLPEKMARKRRKLKQIRLSFVKKPKRGMRRAF 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11032525 11034087 - Bpe005782.1 Bpe12g00519 112532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00519 520 Gene3D Tetratricopeptide repeat domain 388 460 IPR011990 GO:0005515
Bpe12g00519 520 Gene3D Tetratricopeptide repeat domain 302 387 IPR011990 GO:0005515
Bpe12g00519 520 Pfam Pentatricopeptide repeat domain 413 438 IPR002885 -
Bpe12g00519 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Bpe12g00519 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Bpe12g00519 520 PANTHER ATPASE EXPRESSION PROTEIN 3 51 519 - -
Bpe12g00519 520 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Bpe12g00519 520 TIGRFAM PPR: pentatricopeptide repeat domain 432 462 IPR002885 -
Bpe12g00519 520 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Bpe12g00519 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Bpe12g00519 520 Pfam PPR repeat 251 276 IPR002885 -
Bpe12g00519 520 Pfam PPR repeat 183 204 IPR002885 -
Bpe12g00519 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Bpe12g00519 520 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 51 519 - -
Bpe12g00519 520 Pfam PPR repeat family 321 368 IPR002885 -
Bpe12g00519 520 Gene3D Tetratricopeptide repeat domain 144 301 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00519 - - - csv:101213658 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00519 Bpe-Chr12:11032525 Bpe06g00303 Bpe-Chr6:14355437 4.89E-35 dispersed
Bpe12g00519 Bpe-Chr12:11032525 Bpe07g00776 Bpe-Chr7:14236970 1.31E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00519 Bpe_Chr12 FPKM 13.784931 14.449228 19.85075 22.229168 12.988516 12.735509 13.122028 14.502874 13.782872 17.208622