Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe12g00524 | ATGGCAAAGACAGCGACACCTGGTGGAATTTTGACTATTCTGGCTAATCCATCGCCTGAATCTTTATCGGAAGTTCCAGATATAGTGGTTCAGGTCCTCGATCTCAAAGCTGCCGGCAATCGGTACATGTTTACCGCCAGCGATGGAAATATGAGGTTGAAAGCTATTCTGCCTTCAAATCTCACTTCTGATGTGATCTCAGGGAAGATTCAGAGCTTAAGTCTTATTCGTATTCTTGTCTATTCCCTCAATGACATTCCAAATAAGTCCGACAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATAAATCATATCGTCAAAAGTGAGGGATCTGGAATGTTACAGACATCGAAACTAGAAAATATAAGTGAGAGTGAAATGAAAGCAGAAAGGCCAGGTATTCTTCTAAAGCCAAAGCCAGAAATTTACACCAAATCAGCCGCTCAAATTGTACAAGAACAAAGATCCAACATGCCCCCAACTGCACGAATGGCAATGACAAGGAGAGTTCATCCACTTCTTTCATTGAATCCTTACCAAGGCAATTGGATGATTAAAGTTCGTGTTACAAACAAGGAAATTATGCGTATTTATAAGAACGCCAGGGGAGAAGGATGTGTCTTCAATGTGGAGTTAACTGATGATAGCGAAACCCAAATTCAGGCAACAATGTTTAATGAAGCTGCAAGAAAGTTCTATGATAAGTTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTCAAGGTTGCCAACAAGAGATTCAGTGCAGTGAAAAATGATTATGAAATGACTCTAAATGAGAATTCAGAGGTGGAAGAGGTCGCCAATGAAGCTATTTTTGTGCCCGACACAAATTTCAGTTTTGTCCCAATCGACATGTTGGGTCCCTACGTGAATGGAAAAGAACTCGTAGATGTCATTGGAGTTGTTCAGAATGTTTCTTCTACGATGAGTATTCGAAGGAAGATCAATAATGACACTGCTCCAAAGCGTGAAATAACTATTGCTGATGAGACGAAAAAAACAATTGTGGTCTCTCTATGGAACGAGCTTGCAACTACTGTGGGACAGGAATTGCTTGACAAAGCTGATCAATCGCCAGTCATCGCTATTAAATCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGCAGAAGTAAATTGCTTGTAAATCCAGACATACCTGAGGCAAGAAAGTTGAAATCCTGGTTTGATTCGGAAGGCAAAGGAACATCAATGGCGTCTGTTGGCTCTGGTTTGAGCCCATCATCCAAAAATGGAGTCAGGTCGATGTACACTGACAGGATATCTCTGTCTCACATAATCCAAAACCCATCACTAGGGGATGATAAGCCAACATTCTTCAACATTAGAGCATACATCAGCTTCATCAAGCCTGACCAGACAATGTGGTACAGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCCATAGGTTCTGGATTCTGGTGTGAAAGTTGCCAGAAAAATGAGGAAGAATGCAGTTTAAGATATATTATGGTAGTTAGAGTTTCTGATGCCGGTGGTGAAGTCTATCTCTCTCTCTTCAATGAAGAGGCAGTAAAAATCATTGGGTGCTCAGCTGATGAGCTTGAACAGATGAAATCACAGATGGGTGAAGAGAATGATTCATATGAGATGAAACTGAAAGAGGCTACTTGGGTTCCTCATCTGCTGCGGATTAGCGTTTCTCAGAATGAATACAACAACGAGAAGAGGCAAAGGGTTACTGCCAAAGCAGTTGATGCTGTTGATTTTGCTTCTGAATCCAGATTTTTGCTTGAAGAAATATCAAAGATGAGGCTTTCAAGGTAA | 1881 | 40.83 | MAKTATPGGILTILANPSPESLSEVPDIVVQVLDLKAAGNRYMFTASDGNMRLKAILPSNLTSDVISGKIQSLSLIRILVYSLNDIPNKSDKYLIVTKCEVVSPALEMEINHIVKSEGSGMLQTSKLENISESEMKAERPGILLKPKPEIYTKSAAQIVQEQRSNMPPTARMAMTRRVHPLLSLNPYQGNWMIKVRVTNKEIMRIYKNARGEGCVFNVELTDDSETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKRFSAVKNDYEMTLNENSEVEEVANEAIFVPDTNFSFVPIDMLGPYVNGKELVDVIGVVQNVSSTMSIRRKINNDTAPKREITIADETKKTIVVSLWNELATTVGQELLDKADQSPVIAIKSLRVGDFQGVSLSSVSRSKLLVNPDIPEARKLKSWFDSEGKGTSMASVGSGLSPSSKNGVRSMYTDRISLSHIIQNPSLGDDKPTFFNIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGFWCESCQKNEEECSLRYIMVVRVSDAGGEVYLSLFNEEAVKIIGCSADELEQMKSQMGEENDSYEMKLKEATWVPHLLRISVSQNEYNNEKRQRVTAKAVDAVDFASESRFLLEEISKMRLSR | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11107744 | 11110870 | - | Bpe005787.1 | Bpe12g00524 | 112537 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe12g00524 | 626 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 5 | 620 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Bpe12g00524 | 626 | CDD | RPA1_DBD_A | 180 | 283 | - | - | |
Bpe12g00524 | 626 | Gene3D | - | 177 | 286 | IPR012340 | - | |
Bpe12g00524 | 626 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 108 | IPR012340 | - | |
Bpe12g00524 | 626 | Pfam | Replication factor-A C terminal domain | 468 | 615 | IPR013955 | - | |
Bpe12g00524 | 626 | Gene3D | - | 432 | 622 | IPR012340 | - | |
Bpe12g00524 | 626 | CDD | RPA1_DBD_B | 313 | 419 | - | - | |
Bpe12g00524 | 626 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 4 | 621 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Bpe12g00524 | 626 | SUPERFAMILY | Nucleic acid-binding proteins | 446 | 622 | IPR012340 | - | |
Bpe12g00524 | 626 | Gene3D | - | 291 | 431 | IPR012340 | - | |
Bpe12g00524 | 626 | CDD | RPA1_DBD_C | 463 | 621 | IPR013955 | - | |
Bpe12g00524 | 626 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 103 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Bpe12g00524 | 626 | Gene3D | - | 5 | 114 | IPR012340 | - | |
Bpe12g00524 | 626 | PANTHER | REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED | 5 | 620 | - | - | |
Bpe12g00524 | 626 | Coils | Coil | 550 | 570 | - | - | |
Bpe12g00524 | 626 | Pfam | OB-fold nucleic acid binding domain | 193 | 277 | IPR004365 | GO:0003676 | |
Bpe12g00524 | 626 | SUPERFAMILY | Nucleic acid-binding proteins | 178 | 286 | IPR012340 | - | |
Bpe12g00524 | 626 | Pfam | Replication protein A OB domain | 309 | 405 | IPR031657 | - | |
Bpe12g00524 | 626 | SUPERFAMILY | Nucleic acid-binding proteins | 295 | 423 | IPR012340 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe07g00755 | Bpe12g00524 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe07g00251 | Bpe-Chr7:1791913 | Bpe12g00524 | Bpe-Chr12:11107744 | 1.03E-89 | transposed | |
Bpe13g01237 | Bpe-Chr13:17632853 | Bpe12g00524 | Bpe-Chr12:11107744 | 1.05E-98 | transposed | |
Bpe12g00524 | Bpe-Chr12:11107744 | Bpe07g00755 | Bpe-Chr7:14079346 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe12g00524 | K07466 | - | qsu:112017680 | 922.539 |