Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00524 ATGGCAAAGACAGCGACACCTGGTGGAATTTTGACTATTCTGGCTAATCCATCGCCTGAATCTTTATCGGAAGTTCCAGATATAGTGGTTCAGGTCCTCGATCTCAAAGCTGCCGGCAATCGGTACATGTTTACCGCCAGCGATGGAAATATGAGGTTGAAAGCTATTCTGCCTTCAAATCTCACTTCTGATGTGATCTCAGGGAAGATTCAGAGCTTAAGTCTTATTCGTATTCTTGTCTATTCCCTCAATGACATTCCAAATAAGTCCGACAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATAAATCATATCGTCAAAAGTGAGGGATCTGGAATGTTACAGACATCGAAACTAGAAAATATAAGTGAGAGTGAAATGAAAGCAGAAAGGCCAGGTATTCTTCTAAAGCCAAAGCCAGAAATTTACACCAAATCAGCCGCTCAAATTGTACAAGAACAAAGATCCAACATGCCCCCAACTGCACGAATGGCAATGACAAGGAGAGTTCATCCACTTCTTTCATTGAATCCTTACCAAGGCAATTGGATGATTAAAGTTCGTGTTACAAACAAGGAAATTATGCGTATTTATAAGAACGCCAGGGGAGAAGGATGTGTCTTCAATGTGGAGTTAACTGATGATAGCGAAACCCAAATTCAGGCAACAATGTTTAATGAAGCTGCAAGAAAGTTCTATGATAAGTTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTCAAGGTTGCCAACAAGAGATTCAGTGCAGTGAAAAATGATTATGAAATGACTCTAAATGAGAATTCAGAGGTGGAAGAGGTCGCCAATGAAGCTATTTTTGTGCCCGACACAAATTTCAGTTTTGTCCCAATCGACATGTTGGGTCCCTACGTGAATGGAAAAGAACTCGTAGATGTCATTGGAGTTGTTCAGAATGTTTCTTCTACGATGAGTATTCGAAGGAAGATCAATAATGACACTGCTCCAAAGCGTGAAATAACTATTGCTGATGAGACGAAAAAAACAATTGTGGTCTCTCTATGGAACGAGCTTGCAACTACTGTGGGACAGGAATTGCTTGACAAAGCTGATCAATCGCCAGTCATCGCTATTAAATCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGCAGAAGTAAATTGCTTGTAAATCCAGACATACCTGAGGCAAGAAAGTTGAAATCCTGGTTTGATTCGGAAGGCAAAGGAACATCAATGGCGTCTGTTGGCTCTGGTTTGAGCCCATCATCCAAAAATGGAGTCAGGTCGATGTACACTGACAGGATATCTCTGTCTCACATAATCCAAAACCCATCACTAGGGGATGATAAGCCAACATTCTTCAACATTAGAGCATACATCAGCTTCATCAAGCCTGACCAGACAATGTGGTACAGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCCATAGGTTCTGGATTCTGGTGTGAAAGTTGCCAGAAAAATGAGGAAGAATGCAGTTTAAGATATATTATGGTAGTTAGAGTTTCTGATGCCGGTGGTGAAGTCTATCTCTCTCTCTTCAATGAAGAGGCAGTAAAAATCATTGGGTGCTCAGCTGATGAGCTTGAACAGATGAAATCACAGATGGGTGAAGAGAATGATTCATATGAGATGAAACTGAAAGAGGCTACTTGGGTTCCTCATCTGCTGCGGATTAGCGTTTCTCAGAATGAATACAACAACGAGAAGAGGCAAAGGGTTACTGCCAAAGCAGTTGATGCTGTTGATTTTGCTTCTGAATCCAGATTTTTGCTTGAAGAAATATCAAAGATGAGGCTTTCAAGGTAA 1881 40.83 MAKTATPGGILTILANPSPESLSEVPDIVVQVLDLKAAGNRYMFTASDGNMRLKAILPSNLTSDVISGKIQSLSLIRILVYSLNDIPNKSDKYLIVTKCEVVSPALEMEINHIVKSEGSGMLQTSKLENISESEMKAERPGILLKPKPEIYTKSAAQIVQEQRSNMPPTARMAMTRRVHPLLSLNPYQGNWMIKVRVTNKEIMRIYKNARGEGCVFNVELTDDSETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKRFSAVKNDYEMTLNENSEVEEVANEAIFVPDTNFSFVPIDMLGPYVNGKELVDVIGVVQNVSSTMSIRRKINNDTAPKREITIADETKKTIVVSLWNELATTVGQELLDKADQSPVIAIKSLRVGDFQGVSLSSVSRSKLLVNPDIPEARKLKSWFDSEGKGTSMASVGSGLSPSSKNGVRSMYTDRISLSHIIQNPSLGDDKPTFFNIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGFWCESCQKNEEECSLRYIMVVRVSDAGGEVYLSLFNEEAVKIIGCSADELEQMKSQMGEENDSYEMKLKEATWVPHLLRISVSQNEYNNEKRQRVTAKAVDAVDFASESRFLLEEISKMRLSR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11107744 11110870 - Bpe005787.1 Bpe12g00524 112537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00524 626 PANTHER REPLICATION FACTOR A 1, RFA1 5 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe12g00524 626 CDD RPA1_DBD_A 180 283 - -
Bpe12g00524 626 Gene3D - 177 286 IPR012340 -
Bpe12g00524 626 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bpe12g00524 626 Pfam Replication factor-A C terminal domain 468 615 IPR013955 -
Bpe12g00524 626 Gene3D - 432 622 IPR012340 -
Bpe12g00524 626 CDD RPA1_DBD_B 313 419 - -
Bpe12g00524 626 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe12g00524 626 SUPERFAMILY Nucleic acid-binding proteins 446 622 IPR012340 -
Bpe12g00524 626 Gene3D - 291 431 IPR012340 -
Bpe12g00524 626 CDD RPA1_DBD_C 463 621 IPR013955 -
Bpe12g00524 626 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe12g00524 626 Gene3D - 5 114 IPR012340 -
Bpe12g00524 626 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 620 - -
Bpe12g00524 626 Coils Coil 550 570 - -
Bpe12g00524 626 Pfam OB-fold nucleic acid binding domain 193 277 IPR004365 GO:0003676
Bpe12g00524 626 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Bpe12g00524 626 Pfam Replication protein A OB domain 309 405 IPR031657 -
Bpe12g00524 626 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00755 Bpe12g00524 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00251 Bpe-Chr7:1791913 Bpe12g00524 Bpe-Chr12:11107744 1.03E-89 transposed
Bpe13g01237 Bpe-Chr13:17632853 Bpe12g00524 Bpe-Chr12:11107744 1.05E-98 transposed
Bpe12g00524 Bpe-Chr12:11107744 Bpe07g00755 Bpe-Chr7:14079346 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00524 K07466 - qsu:112017680 922.539