Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00530 ATGAGAATCTCGTTCTTTAAATTTCAACTCCAGAATCCTTTGTTCAATCAAAGAATACATCGTTGTTCCATCTCTAGAATCTCAAGTAGTCCATGTCTCGCCGAGACGTTACCTCTGATGAAATCCTCATCCAGATTTCATATAGACCAAGTTTCGTTTATGAAACTCATAGAAAATGCGGTTTCCAATAATGGGTCCGAATCATTTCCGATTATTTTCTCGCAGTTTCGCCATATCGTTGACTGTCATCTCTGTACCTCCATGATCAGAAGGTACACAGAATCAAAAAGTTATTCACTTTCGGTTTACTTTTACTTGGAAATGCGTAAATTCGGCATTCTGCCCGATTCTTCTACTTTTCCCCCAGTTCTTAAAGCGGCGGCCCAGTCAGGTGACATTGCACTTGGAAGAACGATCCATGGCGCTATAACTCGGATGGGATTTCAGTTTGATGTTTATATAAACACTGCTCTGGTACATTTGTATTGCACTTGTTTCTCCATGGATGAGGCATGTCAGCTGTTTGATGAAATGCCCGAGAGAAATTCGGTTTCATGGAATGCATTAATAACAGGGTACACTCATAATAAAAAATTTGTTGAAGCGATTGATTTATTTCGAGAAATGTTGGCATCTGGAATGGAGTCGAGCGAGAGGACTGTGGTGGGAGTTCTTACGGCTTGCGCCCAATTGGGGGCGTTGAATCAGGGAAAGTGGATTCAAGAGTTTATAGGCCATAGTGGGTTGAGACTGAATGTGTTTGTGGGTACTGCTCTTGTCGATATGTATGCAAAATGTGGGGTTGTCAAGGAGGCGGAGAAGGTATTTCATGAACTACGTGAGAAGAACGTTTACACTTGGAATGCTTTGATTTCCGGATTAGCCATGAACGGACAATCCGAAGACGCAATGTGGGCCTTTTCGAGAATGTTGATCGAAAATGTGAAGCCCGATGAGATTACCTTTTTAGCTGTCTTGTGTGCTTGTTGTCACCAAGGACTTGTGACAGAGGGAAAGAAGCAATTCAATCGAATGAAAGAACAGTTTGGGTTACAGCCGAGAATTGAGCATTATGGCTGTATGGTTGACCTACTTGGTCGATCCGGTAATTTGGAAGAAGCCATGGAAGTGATACAAACGATGAATGTTATTAAGCCGGACCCCATTATTTGGAGGTCATTACTTTTCGCTTGCAGAGTTCATGGAAATACCGAATTGGGGGAGCATGTTGTTAAAAAACTTATCGAGCTTGAGCCGTGTAATGGGGAAAACTATGTCTTACTTTCAAATTTATACACAAGGAACCAGAGGTGGGTTGAAGTCGGAAACTTGAGAGAAATGATGGATCGCCGAGGAATCAAAAAAGTCGCCGGTTTAAGTACGATTGAAATTGAAAATGTAGTTTATAAGTTTAATGCTTCCCATGATAGAAAAAGAGAAGATCAAGCTGTACATAAAGTGTTGAATGAGATGATTCGAAAAATCAAATCTGCGGGTTATATTGTGGGCACTGAGATGGCTCTATACGATCTTGAAGAAGAAGAGAAGGAACAGTCTATCATGTATCACAGTGAGAAGCTTGCTTTGGCATTTGGGATTTTGAACCCTCCTTCAGATTCAATGCTAAGGATTGTGAAAAATCTGCGGATTTGTCAGGACTGCCATGAGTTTTTCAAGATTGTTTCATTGGTTTATAAAAAAGATATCACAGTGCGAGATCGAAAACGCTTCCATCACTTTTTAGGGGGCATCTGCTCCTGCAGAGACTACTGGTGA 1776 41.27 MRISFFKFQLQNPLFNQRIHRCSISRISSSPCLAETLPLMKSSSRFHIDQVSFMKLIENAVSNNGSESFPIIFSQFRHIVDCHLCTSMIRRYTESKSYSLSVYFYLEMRKFGILPDSSTFPPVLKAAAQSGDIALGRTIHGAITRMGFQFDVYINTALVHLYCTCFSMDEACQLFDEMPERNSVSWNALITGYTHNKKFVEAIDLFREMLASGMESSERTVVGVLTACAQLGALNQGKWIQEFIGHSGLRLNVFVGTALVDMYAKCGVVKEAEKVFHELREKNVYTWNALISGLAMNGQSEDAMWAFSRMLIENVKPDEITFLAVLCACCHQGLVTEGKKQFNRMKEQFGLQPRIEHYGCMVDLLGRSGNLEEAMEVIQTMNVIKPDPIIWRSLLFACRVHGNTELGEHVVKKLIELEPCNGENYVLLSNLYTRNQRWVEVGNLREMMDRRGIKKVAGLSTIEIENVVYKFNASHDRKREDQAVHKVLNEMIRKIKSAGYIVGTEMALYDLEEEEKEQSIMYHSEKLALAFGILNPPSDSMLRIVKNLRICQDCHEFFKIVSLVYKKDITVRDRKRFHHFLGGICSCRDYW 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11209051 11210826 - Bpe005796.2 Bpe12g00530 112543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00530 591 Pfam PPR repeat family 282 331 IPR002885 -
Bpe12g00530 591 Pfam PPR repeat family 182 229 IPR002885 -
Bpe12g00530 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
Bpe12g00530 591 Gene3D Tetratricopeptide repeat domain 35 241 IPR011990 GO:0005515
Bpe12g00530 591 Gene3D Tetratricopeptide repeat domain 242 339 IPR011990 GO:0005515
Bpe12g00530 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Bpe12g00530 591 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Bpe12g00530 591 TIGRFAM PPR: pentatricopeptide repeat domain 84 117 IPR002885 -
Bpe12g00530 591 TIGRFAM PPR: pentatricopeptide repeat domain 184 215 IPR002885 -
Bpe12g00530 591 TIGRFAM PPR: pentatricopeptide repeat domain 257 284 IPR002885 -
Bpe12g00530 591 Pfam PPR repeat 357 381 IPR002885 -
Bpe12g00530 591 Gene3D Tetratricopeptide repeat domain 340 531 IPR011990 GO:0005515
Bpe12g00530 591 Pfam DYW family of nucleic acid deaminases 499 591 IPR032867 GO:0008270
Bpe12g00530 591 Pfam E motif 401 463 IPR046848 -
Bpe12g00530 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Bpe12g00530 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Bpe12g00530 591 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 35 565 - -
Bpe12g00530 591 SUPERFAMILY TPR-like 263 439 IPR011990 GO:0005515
Bpe12g00530 591 PANTHER - 35 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00530 - - - csv:101215826 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00530 Bpe-Chr12:11209051 Bpe14g00577 Bpe-Chr14:4887249 5.24E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00530 Bpe_Chr12 FPKM 2.818565 2.628572 1.908902 0.0 6.673442 5.550331 4.93185 4.319808 5.973856 0.0