Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00532 ATGTGCGAAAAATTAGTAGTTGCTAATTTATCTTCGAACAATTTCACTGGTCGGATTGACAAGTGTTTTGAGACTTGTTGGAATTTGAAGTACTTGGATTTGAGCTCCAATCGCTTAACTGGGGATTTATGGGTCGGAATGGAGAAACTCTGGGAAATCTCCTTCTCCAAAAACAATCTAACCGGCGAAGTTTCACCGCTGCTTTTCACAGAGGATTGCAGCTTGAACGTGATAGACCTTTCTGAGAATAATTTCAGAGGTGAATTTCCAGGAGAGATATCGAATTGCCTGAATTTGACTAGTTTGATTCTTTGGGGGAACAAATTGACGGGCAAAATTCCGACCGAGATAGGACGGATTTTAAGCATAGAAGCTTTATATTTTGGTAACAACAATTTTTCGAGGGAAATTCCTGAGTCTCTTTTGGGCTTGACCAAATTAGTCTTCTTGGATTTGAGCAAAAACAACTTTGGTGGAGAAATTCAAGACATTTTTGGTAAATTCAGGCAGGTAAAATTTCTTCTTCTACATGGAAATTCATATACTGGAGGGATACATAAATCTGGAATTCTCAACCTGCCTAACATTTCCCGCTTAGATCTTAGTTACAACGAATTTTCAGGCCCATTGCCAGTGGAAATCTCCCAAATGAAGAGTCTGAAAATCTTGATCCTAGCCCACAATCAATTCGCCGGAAACGTTCCACCGGAAATTGGCAACTTGCAGAACCTACAAGCTCTTGATCTCTCATTCAACGCATTAAATGGCTCAATTCCAAGCAACCTTGGAAACATGAAGTCCCTGTTGTGGTTAATGCTTGCAAACAACTTGTTAACGGGTCGAATTCCGAGCGAATTGGGGAATTGCTCTAGCCTGCTATGGCTTAATCTGGCCAACAATCAGCTCTCCGGAGAAATTCCATCAGAACTAACAAATATAGGATTAAATGCAACCGTGACATTTGAAGAAAATCGTAGAAATGAAAATTTCACAGCTGGTTCAGGTGAGTGCCTGGCAATGAAGAGATGGATTCCTGCAAATTACCCTCCTTTTAGTTTTGTCTACACACTCCTTACCAGGAAAAGTTGTCGAAACACCTGGGATCGACTGCTTAAAGGGTATGGTCTTTTTCCGACGTGTAGTCCTGGATCATCGATGAGAACTCTCCAAATCTCGGGTTATGTTCAACTAACTGGAAATCAGATTTCTGGGGAGGTACCTTCAGGTATTGGGAAGATGCAGAATTTCAGTATGTTGCACTTAGGATGCAACGAATTCTCAGGCAGACTCCCACCACAGATAGGCGAATTGCCGCTCGTAGTCCTGAATGTCTCCTACAACAAGTTTTCAGGTGAAATTCCTTCAGAAATTGGAAACATTAGATGCTTGCAGAATCTAGATTTGTCCTACAACAACTTTTCAGGCACATTTCCTAAGAGTTTGAGCAAATTAAATGAACTGAGCAAGTTCAACATCTCATATAACCCTCTGATTTCTGGAGAAATACCTGCAACTGGGCAATTTGCGACTTTTGAAAAAGAATCGTTTCTTGGAGATCCCCTTCTGTGCCTTCCAAACTTCTTCAACATCACCCCTCCTATGAAACATAACGAAGATTTTGAGAAATTGTCAAAAGATTCTTCAAGAATGACTAAAATATGGGCTCTCTCGTCTTTGGGGCTGGTTGTCATGATAGTTGCGCTAATTACAGTTACAGTGTGTTTGCTAGTGAAATCTCCATCAGAAAATCGAAAATCTCATGAATCGAAATATGGCGAGCATCCAAAGGAATTTGCAGCGGGCTCTCAGTATTCTTCACCATGGTTATCAGATACCGTGAAGGTGATCCAGCTTGACAAAACAACTTTTACACATTCCGACATTCTAAAAGCCACCGACAACTTCTCCGAAAAAAAGGTAATCGGAAAAGGAGGTTTCGGGACCGTCTACAGAGGGGTTTTACGGGATGGGAGACAGGTAGCTGTCAAGAAGCTTCAGAGAGAAGGAACAGAAGGTGAAAGAGAGTTTCAAGCTGAAATGAAAGTCCTTACCGGCAATGGGTTCGGCTGGCCGCACCCGAATCTAGTTACACTTTATGGATGGTGTCTAGATGGATCGGAAAAGATATTGGTATACGAATTTATGGAGGGTGGCAGTTTAGAAGATCTTATTTCAGATCGACTGAGACTAACATGGCGAAAACGCCTTGATATAGCAATCGATGTAGCGCGGGCGTTGGTGTTTCTTCACTACGAATGCTTCCCTCCGATTGTCCACCGTGACGTGAAAGCAAGCAACGTCATGCTAGACAGAGACGGTACGGCCCGAGTCACCGATTTCGGCTTAGCGAGAGTGGTGGAGTCCGGCGATAGTCATGTAAGCACCATGGTAGCAGGAACAGTCGGGTATATAGCTCCTGAATACGGGCAGACATGGCAGGCAACGACGAAGGGGGATGTCTACAGTTTTGGGGTGTTGGCCATGGAGCTTGCGACAGCGCGGCGGGCGGTAGACGGCGGCGAGGAGTGCCTGGTTGAGTGGGCGAGGAGGGTGATGGGAAATGTGGAGAGAGAGGGGCTAGCTGGGGCAGTGAAGCCGGCGGTGCATTTTGGGTCTGGGATAGCAGATGAGGCGGAGGAGATGGGAGAGTTGCTGAGGATTGGGGTCGAATGCACGGCGGAGACGCCACAGCTTCGGCCGAACATGAAGGAGGTGCTTGCTAGGTTGATCAAGGTTACCTTTTTATGA 2748 44.58 MCEKLVVANLSSNNFTGRIDKCFETCWNLKYLDLSSNRLTGDLWVGMEKLWEISFSKNNLTGEVSPLLFTEDCSLNVIDLSENNFRGEFPGEISNCLNLTSLILWGNKLTGKIPTEIGRILSIEALYFGNNNFSREIPESLLGLTKLVFLDLSKNNFGGEIQDIFGKFRQVKFLLLHGNSYTGGIHKSGILNLPNISRLDLSYNEFSGPLPVEISQMKSLKILILAHNQFAGNVPPEIGNLQNLQALDLSFNALNGSIPSNLGNMKSLLWLMLANNLLTGRIPSELGNCSSLLWLNLANNQLSGEIPSELTNIGLNATVTFEENRRNENFTAGSGECLAMKRWIPANYPPFSFVYTLLTRKSCRNTWDRLLKGYGLFPTCSPGSSMRTLQISGYVQLTGNQISGEVPSGIGKMQNFSMLHLGCNEFSGRLPPQIGELPLVVLNVSYNKFSGEIPSEIGNIRCLQNLDLSYNNFSGTFPKSLSKLNELSKFNISYNPLISGEIPATGQFATFEKESFLGDPLLCLPNFFNITPPMKHNEDFEKLSKDSSRMTKIWALSSLGLVVMIVALITVTVCLLVKSPSENRKSHESKYGEHPKEFAAGSQYSSPWLSDTVKVIQLDKTTFTHSDILKATDNFSEKKVIGKGGFGTVYRGVLRDGRQVAVKKLQREGTEGEREFQAEMKVLTGNGFGWPHPNLVTLYGWCLDGSEKILVYEFMEGGSLEDLISDRLRLTWRKRLDIAIDVARALVFLHYECFPPIVHRDVKASNVMLDRDGTARVTDFGLARVVESGDSHVSTMVAGTVGYIAPEYGQTWQATTKGDVYSFGVLAMELATARRAVDGGEECLVEWARRVMGNVEREGLAGAVKPAVHFGSGIADEAEEMGELLRIGVECTAETPQLRPNMKEVLARLIKVTFL 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11216312 11219059 - Bpe005798.1 Bpe12g00532 112545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00532 915 SUPERFAMILY Protein kinase-like (PK-like) 618 909 IPR011009 -
Bpe12g00532 915 Gene3D Ribonuclease Inhibitor 374 539 IPR032675 -
Bpe12g00532 915 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Bpe12g00532 915 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 913 - -
Bpe12g00532 915 CDD STKc_IRAK 641 911 - -
Bpe12g00532 915 Gene3D Phosphorylase Kinase; domain 1 602 714 - -
Bpe12g00532 915 Gene3D Ribonuclease Inhibitor 1 308 IPR032675 -
Bpe12g00532 915 SUPERFAMILY L domain-like 2 325 - -
Bpe12g00532 915 PRINTS Leucine-rich repeat signature 241 254 - -
Bpe12g00532 915 PRINTS Leucine-rich repeat signature 29 42 - -
Bpe12g00532 915 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Bpe12g00532 915 SUPERFAMILY L domain-like 384 507 - -
Bpe12g00532 915 Gene3D Transferase(Phosphotransferase) domain 1 715 914 - -
Bpe12g00532 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Bpe12g00532 915 Pfam Leucine Rich repeat 28 41 IPR001611 GO:0005515
Bpe12g00532 915 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 913 - -
Bpe12g00532 915 ProSiteProfiles Protein kinase domain profile. 635 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00532 915 SMART serkin_6 635 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00532 915 Pfam Protein kinase domain 635 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00532 - - - tcc:18604765 1305.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00532 Bpe-Chr12:11216312 Bpe06g00288 Bpe-Chr6:13933085 3.26E-18 dispersed
Bpe12g00532 Bpe-Chr12:11216312 Bpe03g00927 Bpe-Chr3:28950384 3.50E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63630 PF00069 Pkinase 3.90E-44 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00532 Bpe_Chr12 FPKM 0.162879 0.0 0.172586 0.165228 0.34371 0.214256 0.490019 0.0 0.033318 0.0