Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00538 ATGAGCTGTTCTTGCGATCTTCTCGAAACTTGTTGCAGTTCGATCTTTGGATTACCATACTTGACCATGGACGTTGGAGGATTTTCAGGAGGTGGAGTACTTCAATGCGTTTCTCGATTGGTTTTCTGCGCGGTTTCTCGAGCCCTGGTGGCTTTTTTCGCGATAGGTGGAGCTTTTGCAGGAGCCATTGCTGGTGGTTTAGCAGGTAGGGTTTCAAATTGTGGTGTTTTTCGTGGGGCTGCATTGGGTGCTCTTGCTGGGGCTGTTCTTTCTGTAGAGGTTTTGGAGGCTTCCCCTTCCTACTGGTGTCTCCAACAATCTGCTTCTCGCCCCTCGTTAGCCATGGCCGATTTCATCGAGGAGCTTCTTCGCCGGAGATTCGTAGAGGATGATTTTACTCCGGCAATGTTAACTGCTTACCGGCGGCAGCATTGCTATGTAAGTTATGAAGAGATCCACAATATGTTTGGGGGAGTTGCATGCGGAGGATCATCAGGCGATTCACCGAGAAAACTACCATGCCATGTTTTGATCGAGGAAATTAAGCCGGACCAGAGCACCTGCTGCGCAATTTGTTTGCAGGTCATTTTTCGAGATCACACGATGCTTAATTCTCACTTCTCGATTTCAAGAAACTTGCATTCTTTAGTTTGA 654 47.71 MSCSCDLLETCCSSIFGLPYLTMDVGGFSGGGVLQCVSRLVFCAVSRALVAFFAIGGAFAGAIAGGLAGRVSNCGVFRGAALGALAGAVLSVEVLEASPSYWCLQQSASRPSLAMADFIEELLRRRFVEDDFTPAMLTAYRRQHCYVSYEEIHNMFGGVACGGSSGDSPRKLPCHVLIEEIKPDQSTCCAICLQVIFRDHTMLNSHFSISRNLHSLV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11251860 11253962 - Bpe005804.1 Bpe12g00538 112551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00538 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 33 203 - -
Bpe12g00538 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 33 203 IPR044523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00538 - - - jre:109013304 171.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00772 Bpe12g00538 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00538 Bpe-Chr12:11251860 Bpe06g00140 Bpe-Chr6:2509541 1.42E-22 dispersed
Bpe12g00538 Bpe-Chr12:11251860 Bpe07g00772 Bpe-Chr7:14216080 3.38E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g577 . . . . Bpe12g00538 . Bma06g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0063 . . . . . . . . Bpe07g00772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017326 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00538 Bpe_Chr12 FPKM 124.242607 140.764786 437.346619 429.010406 56.871174 66.393059 52.454433 7.404635 6.445945 6.921141