Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00540 CTCCTTGCATCCATGGGGGGAGATAAAGATATCAGGAATTTCTCCTCCCTTCTCGCTTTCTTCCTCTTTGCCTCCCTCCTTGGCCCCGCCTTCGCTTCTGCTAACGGCGGCGGCTCTTCTTATTCTCCGCCGGATAATTACCTCATAGACTGCGGCTCCCCGGAACTGACTCGCCTCGACGACGGCCGGACATTTAAGTCTGATCCCGATAGTACTTCTCTCCTCTCTACCGACGAAGACGTACTGACCTCCGCTGGTTCCATTGCTGTCAACTCGTCGTCTCCATCTCTTCCATTGTATAAAAGTGCTAGAATTTTTCCGGCTGCATCGACCTACAGTTTTTATATTTCGCAGACCGGCCGGCACTGGGTTCGGCTCTACTTTTACCCTCTCCTTCATCCTACGTATAATCTCTCCGGTGCTGTTTTTACGGTCACCGCTGATAATTTCGTCCTCCTGCATGATTTCTCGGTGAAGGATGATTCGAAATTGGAGTTCAAAGAATACCTTATCAACGTAAGTAGTGAGAAATTCTCTCTCCAATTCAAACCCAAGAAGAATTCTTGTGCATTTGTGAATGCTATTGAGCTTGTTTCGGCACCGGATTCTCTGATTTCTGATTTCGCTTCTGCAATTTCGCCCGTCGGAGATTTCAAAGGTTTGTCGAATTACGCTCTTCAATTAAATTATCGAGTAAATGTGGGAGGACAACCTCTAACTCCTCGAAACGATACCCTTTCAAGAACATGGGAATCGGATTCTGAGTATAACATGTTTCCTCAAGGGTCTAAAAATGTCTCTGTTCCTCCGAGTTCGATAAGATACTCGCCGGACGGAGCGACGCCGTTGATTGCACCGAATTCAGTCTACGCGACAGCTCAAGATATGCAAGACCCTGAAACTATGCTAGTGAGCTTCAATCTCACATGGAGTTTCAGCGTCGAAATGGGATACTCTTATTTGATCAGACTCCATTTTTGCGACATTGTGAGCAAGGCTCTGAACAGCCTATACTTCAACGTGTACATCAATGGAGTAATGGGTGTGTCGAATCTCGATCTCTCGAGTCTCACTGGCTTCCTTTCCTCTGCTTATTACAAAGACCTTGTGGTGAATTCTTCCGCCATTGTTAACAGCACGATCATGGTTCAGGTCGGCCCTTCTAATCTTCGATCCGGGGTCGAAAACGCCATTCTCAACGGCGTGGAGATTATGAAAATAAGCAACGACGCCAGAAGCTTGGATGGTTTGTTCAACGTCGATGAGGTTTTCATGGGGGATCGAGGGAGGAGCTGGATGAAGATCGTCGCCGCCGTCGTGCTCGGAATGGGGGTGACTGCTATACTGTTTCTTGCCGTAGTTTTTGTTCGACGGAAAAGGAGACCTCAAGGTTATGAGAAGAGAAACAGTTTCTCTTCTTGGCTTCTTCCTCTATCTTCTTCTAGCCGTTCTTCCTTCATGTCTAGCAGGAGCAGCTCCAGAAGATCGAATAATTTCGGGTCGAGAAAGAGCAAAAATGGCTTTTCAGGCATCTATAGCAGTGTAGGCCTGGGAAGATTCTTCACTTTCAACACATTACAGAGCGCTACACAAAATTTCGACGAGAAGGCAGTGATCGGCGTTGGTGGGTTTGGAAAAGTGTACATCGGAGAGTTGGAAGACGGAACTAAACTCGCCATCAAAAGAGGAAACGCAAGCTCCGAGCAGGGCATCAACGAGTTCCGAACAGAGATCGACATGCTCTCGAAGCTCCGCCATCGTCACCTCGTATCCCTCATCGGCTTCTGCGACGAAAATTCCGAGATGATTCTCGTCTACGAATACATGGCCAACGGACCTTTACGAGACCATCTCTACGGCTCCAACCTCCCTCCATTGTCGTGGAAAAAGCGACTCGAAATCTGCATTGGAGCTGCCAGAGGTTTACATTATCTCCACACCGGCGCCGCGCAAGGAATCATCCACCGCGATGTCAAGACGACGAACATCCTCCTCGACGAGAATTTCGTCGCCAAAGTTTCCGATTTCGGCCTCTCGAAAGCCGCTCCCTCGCTTGAGCAAACCCACGTCAGCACGGCGGTGAAGGGCAGTTTCGGCTACCTCGATCCCGAATACTTCAGAAGACAACAACTGACCGACAAATCCGACGTTTATTCGTTCGGAGTCGTCCTCTTCGAAGTGTTATGCGCTCGGCTGGTCATAAATCCCGCCCTTCCGAGAGAGCAGGTGAATCTCGCCGAGTGGGCGATGAAATGTCACAAAAAGGGTTCGCTTGAAAAGATAATCGATCCCCATATTGCTTCCTCCATCAGCCATGGCTCCCTCAAAAAATTTATAGAAGCTGCAGAGAAGTGTTTAGCTGAACATGGCGTCGACAGGCCCTCCATGGGAGATGTTTTGTGGAACTTGGAATATGCTTTGCAGCTTCAAGAAGCAATCTCAGAGATTGATCATCCTCCAGAAGAGAACAGTTCTAATCTGGTCGTCTTAAACAAATCAGACGATAATGGTCGTCGAGGAGAACCGAGCGCCGCCGTGAACGATAATTCCGAAGTACTCGTTGGGTCTCCGTTGTTTTCTCAGATCGGAAGCTTCCAAGGAAGGTGA 2607 48.52 LLASMGGDKDIRNFSSLLAFFLFASLLGPAFASANGGGSSYSPPDNYLIDCGSPELTRLDDGRTFKSDPDSTSLLSTDEDVLTSAGSIAVNSSSPSLPLYKSARIFPAASTYSFYISQTGRHWVRLYFYPLLHPTYNLSGAVFTVTADNFVLLHDFSVKDDSKLEFKEYLINVSSEKFSLQFKPKKNSCAFVNAIELVSAPDSLISDFASAISPVGDFKGLSNYALQLNYRVNVGGQPLTPRNDTLSRTWESDSEYNMFPQGSKNVSVPPSSIRYSPDGATPLIAPNSVYATAQDMQDPETMLVSFNLTWSFSVEMGYSYLIRLHFCDIVSKALNSLYFNVYINGVMGVSNLDLSSLTGFLSSAYYKDLVVNSSAIVNSTIMVQVGPSNLRSGVENAILNGVEIMKISNDARSLDGLFNVDEVFMGDRGRSWMKIVAAVVLGMGVTAILFLAVVFVRRKRRPQGYEKRNSFSSWLLPLSSSSRSSFMSSRSSSRRSNNFGSRKSKNGFSGIYSSVGLGRFFTFNTLQSATQNFDEKAVIGVGGFGKVYIGELEDGTKLAIKRGNASSEQGINEFRTEIDMLSKLRHRHLVSLIGFCDENSEMILVYEYMANGPLRDHLYGSNLPPLSWKKRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVSDFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARLVINPALPREQVNLAEWAMKCHKKGSLEKIIDPHIASSISHGSLKKFIEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAISEIDHPPEENSSNLVVLNKSDDNGRRGEPSAAVNDNSEVLVGSPLFSQIGSFQGR 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11275015 11277621 + Bpe005806.1 Bpe12g00540 112553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00540 868 ProSiteProfiles Protein kinase domain profile. 533 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00540 868 Gene3D Phosphorylase Kinase; domain 1 500 608 - -
Bpe12g00540 868 SMART serkin_6 533 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00540 868 PANTHER OS03G0759600 PROTEIN 36 841 - -
Bpe12g00540 868 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Bpe12g00540 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Bpe12g00540 868 CDD STKc_IRAK 539 804 - -
Bpe12g00540 868 SUPERFAMILY Protein kinase-like (PK-like) 507 804 IPR011009 -
Bpe12g00540 868 Pfam Malectin-like domain 49 407 IPR024788 -
Bpe12g00540 868 Pfam Protein tyrosine and serine/threonine kinase 537 749 IPR001245 GO:0004672|GO:0006468
Bpe12g00540 868 Gene3D - 225 410 - -
Bpe12g00540 868 Gene3D - 46 201 - -
Bpe12g00540 868 Gene3D Transferase(Phosphotransferase) domain 1 609 824 - -
Bpe12g00540 868 PANTHER OS07G0166700 PROTEIN 36 841 IPR045272 GO:0004714|GO:0006468
Bpe12g00540 868 MobiDBLite consensus disorder prediction 480 501 - -
Bpe12g00540 868 MobiDBLite consensus disorder prediction 818 847 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00156 Bpe-Chr1:869534 Bpe12g00540 Bpe-Chr12:11275015 0 dispersed
Bpe11g00498 Bpe-Chr11:3842006 Bpe12g00540 Bpe-Chr12:11275015 0 dispersed
Bpe12g00086 Bpe-Chr12:630635 Bpe12g00540 Bpe-Chr12:11275015 0 dispersed
Bpe12g00540 Bpe-Chr12:11275015 Bpe14g00141 Bpe-Chr14:1888768 0 dispersed
Bpe12g00540 Bpe-Chr12:11275015 Bpe15g00855 Bpe-Chr15:18542663 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63631 PF12819 Malectin_like 7.40E-36 CL0202 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00540 - - cpep:111793369 1193.33