Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00541 ATGGCAACAGTCACCGCCCCCGCTCCTGTTTTCCGGCTGACTACTTCGAAAACCAGATTCTTATCCGGCTCTTCCGGTAAACTGAACCGAGAGATTTCTGTTAAATCATCGACTTCTCCGGTTACTTCTTTCAAAGTTGAGGCTAAGAAAGGAGAATGGCTGCCGGGTCTACCCTCGCCAGCTTATCTCAACGGCAGTCTTCCCGGCGACAACGGGTTTGACCCACTTGGGCTAGCTGAGGATCCAGAAAATCTCCGATGGTTCGTCCAAGCTGAGCTAGTCAATGGCCGGTGGGCGATGTTGGGTGTCGCCGGAATGTTGCTGCCGGAAGTGTTTACCAAGATCGGGATCCTCAACGTACCCAAATGGTACGACGCCGGAAAAGCTGAATACTTCGCATCGTATTCCACTCTTTTCGTGATTGAGTTCATTCTGTTCCACTACGTCGAGATCAGAAGATGGCAAGATATTAAAAACCCAGGAAGTGTGAATCAAGATCCAATTTTTAAGCAATACAGCTTACCCCCAAATGAAGTTGGGTATCCCGGCGGAATTTTTAACCCTCTCAATTTCGCTCCCACCCTCGAAGCCAAAGAGAAGGAGATCGCAAATGGTAAGTTGGCGATGTTGGCGTTTTTGGGGTTTGTGATTCAGCACAATGTGACCGGACAAGGGCCGTTCGACAACCTTTTACAGCACCTATCCGACCCATGGCACAACACCATCGTCCAAACGCTTGGTTAG 744 49.6 MATVTAPAPVFRLTTSKTRFLSGSSGKLNREISVKSSTSPVTSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGILNVPKWYDAGKAEYFASYSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGKLAMLAFLGFVIQHNVTGQGPFDNLLQHLSDPWHNTIVQTLG 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11278473 11279391 + Bpe005807.1 Bpe12g00541 112554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00541 247 SUPERFAMILY Chlorophyll a-b binding protein 50 246 - -
Bpe12g00541 247 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 246 - -
Bpe12g00541 247 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 246 IPR001344 GO:0009765|GO:0016020
Bpe12g00541 247 Pfam Chlorophyll A-B binding protein 60 219 IPR022796 -
Bpe12g00541 247 Gene3D Chlorophyll a/b binding protein domain 60 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00779 Bpe12g00541 CCT
Bpe07g00779 Bpe12g00541 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01097 Bpe-Chr3:30131429 Bpe12g00541 Bpe-Chr12:11278473 1.70E-74 dispersed
Bpe04g01392 Bpe-Chr4:20595917 Bpe12g00541 Bpe-Chr12:11278473 2.10E-72 dispersed
Bpe04g01879 Bpe-Chr4:23879251 Bpe12g00541 Bpe-Chr12:11278473 6.22E-47 dispersed
Bpe08g01246 Bpe-Chr8:13961535 Bpe12g00541 Bpe-Chr12:11278473 1.64E-48 dispersed
Bpe11g00893 Bpe-Chr11:6579382 Bpe12g00541 Bpe-Chr12:11278473 1.38E-48 dispersed
Bpe12g00541 Bpe-Chr12:11278473 Bpe15g01065 Bpe-Chr15:19919108 2.78E-47 dispersed
Bpe12g00541 Bpe-Chr12:11278473 Bpe07g00779 Bpe-Chr7:14254429 6.09E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00541 K08910 - pvy:116133502 454.136