Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00543 ATGCTGGGTTCTGCGATCATGCTATTGGGAAAGCAAATTTCTCTCTCTTCTGTAGACGGCGAAGCTCCGGACGGCGATTTTGGAGGTTCTTCGGAGAAAATAGAGCACGAAGAGGCGGAGAAGGCTACAGTCGAAGGAAAAGTGACTGAAGAAACGCATGAAAATGAAGAAGCTCTTACGGATGAACACGATTCAGTAGACATGGAAACAGAGAACATTCAACCGGCCATAAAATCCAAAAATGGTGAAATTGGTGAGACAGAACAGTGCGACACAAACTTAAAAGAGAAGACCTCGAAGAAACCAGACAAAATTCTTCCATGTCCGCGCTGTAAAAGTATGGAAACTAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCTCGCTATTTTTGCAAAGCTTGTCAAAGATATTGGACATCCGGTGGCACCATGAGAAACATGCCCGTTGGAGCCGGTCGTCGCAAGAACAAGAACTCCCCCTTGGCCTATCGACATATTACTGTGTCAGAAACTCTTCAACTGGTTCGAACTAACGAAAAAGTTTTAAGTTTTGGTTCGGTAACATCAGGTCTTAGTGATGGAGAAAAAGGCTTGAAGGAAAACTTAAATGGGTTCGAAAAAATCGAAGGACAAGGCTTTCCGGCTTCTCGGGTTGGTCATGAAATTAGCGACGATTGCTCGAGTGTATCATCCGTGACAGTGTCGGATTCAGTCGAGGAAGGAGTCAATAAAAGTTCTCATCAACAATACTTCCAAGATCTTAATGTCAGCCCTTCCTATTTGCCGTTTTTTCCTGGAGTTTCTTGGCCGTATTGCCCTCCTGGATTTCCATTATCGTTCTATCACGGATCTTATTGGAACCCTCCTTGGTTTTTCCCCCAGCAGTCTTCTCCGAGCTCTCCGAAAAACTCTCCAACCTTGGGAAAACATTCAAGAGACAGTGATATGTGGAAAACATGCAATTCGAATAACAGAGAACTTAATAAACAGAGACAGGGGAGCGTTTTAGTTCCAAAAACATTACGGATCGGCAACCCGGATGATGCAGCTAAGAGTTCGATATGGGCGACACTGGGGATTAAGAACGAGTCCATCTGCCAGGGTAATATGTTTAAGGACTTCCAATCTAAAGGTGTTGAGAAGGCTTGCTTAGCTGAAAGATCTTCAGTTTTGCAGGCTAACCCAGCAGCCTTGACAAGATCCCTCACTTTTCATGAGACTGCTTGA 1233 44.04 MLGSAIMLLGKQISLSSVDGEAPDGDFGGSSEKIEHEEAEKATVEGKVTEETHENEEALTDEHDSVDMETENIQPAIKSKNGEIGETEQCDTNLKEKTSKKPDKILPCPRCKSMETKFCYYNNYNVNQPRYFCKACQRYWTSGGTMRNMPVGAGRRKNKNSPLAYRHITVSETLQLVRTNEKVLSFGSVTSGLSDGEKGLKENLNGFEKIEGQGFPASRVGHEISDDCSSVSSVTVSDSVEEGVNKSSHQQYFQDLNVSPSYLPFFPGVSWPYCPPGFPLSFYHGSYWNPPWFFPQQSSPSSPKNSPTLGKHSRDSDMWKTCNSNNRELNKQRQGSVLVPKTLRIGNPDDAAKSSIWATLGIKNESICQGNMFKDFQSKGVEKACLAERSSVLQANPAALTRSLTFHETA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11292910 11294534 - Bpe005809.1 Bpe12g00543 112556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00543 410 MobiDBLite consensus disorder prediction 26 68 - -
Bpe12g00543 410 MobiDBLite consensus disorder prediction 14 68 - -
Bpe12g00543 410 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 MobiDBLite consensus disorder prediction 297 317 - -
Bpe12g00543 410 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 PANTHER CYCLIC DOF FACTOR 1 5 409 - -
Bpe12g00543 410 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 PANTHER CYCLIC DOF FACTOR 2 5 409 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00543 - - - jre:109000197 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00543 Bpe-Chr12:11292910 Bpe14g00173 Bpe-Chr14:2111758 1.04E-87 wgd
Bpe12g00543 Bpe-Chr12:11292910 Bpe02g01453 Bpe-Chr2:17881393 1.68E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT1G29160 56.9 7.2e-47 183.7
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT1G29160 52.0 2.9e-40 161.8
Bpe08g00765 . 8 139 C2C2-Dof Transcription Factor Family AT1G29160 53.9 1.6e-38 156.0
Bpe08g00766 CCT 7 139 C2C2-Dof Transcription Factor Family AT1G29160 51.8 3.0e-37 151.8
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT2G34140 53.5 8.5e-45 176.8
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.8e-39 159.1
Bpe08g00765 . 8 103 C2C2-Dof Transcription Factor Family AT2G34140 66.7 3.8e-37 151.4
Bpe04g01330 BCT,CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.0e-42 169.9
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 1.4e-38 157.1
Bpe08g01366 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bpe12g00543 . 97 408 C2C2-Dof Transcription Factor Family AT3G47500 51.1 1.8e-73 273.5
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.8e-38 156.4
Bpe15g01111 . 1 118 C2C2-Dof Transcription Factor Family AT5G02460 54.4 1.2e-36 151.0
Bpe02g00845 CCT,ECH 54 140 C2C2-Dof Transcription Factor Family AT3G55370 79.3 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22208 PF02701 zf-Dof 2.20E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00543 Bpe_Chr12 FPKM 7.826087 7.422649 56.4813 50.441734 26.538244 33.281292 23.60475 0.776177 1.40736 0.851516