Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00543 ATGCTGGGTTCTGCGATCATGCTATTGGGAAAGCAAATTTCTCTCTCTTCTGTAGACGGCGAAGCTCCGGACGGCGATTTTGGAGGTTCTTCGGAGAAAATAGAGCACGAAGAGGCGGAGAAGGCTACAGTCGAAGGAAAAGTGACTGAAGAAACGCATGAAAATGAAGAAGCTCTTACGGATGAACACGATTCAGTAGACATGGAAACAGAGAACATTCAACCGGCCATAAAATCCAAAAATGGTGAAATTGGTGAGACAGAACAGTGCGACACAAACTTAAAAGAGAAGACCTCGAAGAAACCAGACAAAATTCTTCCATGTCCGCGCTGTAAAAGTATGGAAACTAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCTCGCTATTTTTGCAAAGCTTGTCAAAGATATTGGACATCCGGTGGCACCATGAGAAACATGCCCGTTGGAGCCGGTCGTCGCAAGAACAAGAACTCCCCCTTGGCCTATCGACATATTACTGTGTCAGAAACTCTTCAACTGGTTCGAACTAACGAAAAAGTTTTAAGTTTTGGTTCGGTAACATCAGGTCTTAGTGATGGAGAAAAAGGCTTGAAGGAAAACTTAAATGGGTTCGAAAAAATCGAAGGACAAGGCTTTCCGGCTTCTCGGGTTGGTCATGAAATTAGCGACGATTGCTCGAGTGTATCATCCGTGACAGTGTCGGATTCAGTCGAGGAAGGAGTCAATAAAAGTTCTCATCAACAATACTTCCAAGATCTTAATGTCAGCCCTTCCTATTTGCCGTTTTTTCCTGGAGTTTCTTGGCCGTATTGCCCTCCTGGATTTCCATTATCGTTCTATCACGGATCTTATTGGAACCCTCCTTGGTTTTTCCCCCAGCAGTCTTCTCCGAGCTCTCCGAAAAACTCTCCAACCTTGGGAAAACATTCAAGAGACAGTGATATGTGGAAAACATGCAATTCGAATAACAGAGAACTTAATAAACAGAGACAGGGGAGCGTTTTAGTTCCAAAAACATTACGGATCGGCAACCCGGATGATGCAGCTAAGAGTTCGATATGGGCGACACTGGGGATTAAGAACGAGTCCATCTGCCAGGGTAATATGTTTAAGGACTTCCAATCTAAAGGTGTTGAGAAGGCTTGCTTAGCTGAAAGATCTTCAGTTTTGCAGGCTAACCCAGCAGCCTTGACAAGATCCCTCACTTTTCATGAGACTGCTTGA 1233 44.04 MLGSAIMLLGKQISLSSVDGEAPDGDFGGSSEKIEHEEAEKATVEGKVTEETHENEEALTDEHDSVDMETENIQPAIKSKNGEIGETEQCDTNLKEKTSKKPDKILPCPRCKSMETKFCYYNNYNVNQPRYFCKACQRYWTSGGTMRNMPVGAGRRKNKNSPLAYRHITVSETLQLVRTNEKVLSFGSVTSGLSDGEKGLKENLNGFEKIEGQGFPASRVGHEISDDCSSVSSVTVSDSVEEGVNKSSHQQYFQDLNVSPSYLPFFPGVSWPYCPPGFPLSFYHGSYWNPPWFFPQQSSPSSPKNSPTLGKHSRDSDMWKTCNSNNRELNKQRQGSVLVPKTLRIGNPDDAAKSSIWATLGIKNESICQGNMFKDFQSKGVEKACLAERSSVLQANPAALTRSLTFHETA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11292910 11294534 - Bpe005809.1 Bpe12g00543 112556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00543 410 MobiDBLite consensus disorder prediction 26 68 - -
Bpe12g00543 410 MobiDBLite consensus disorder prediction 14 68 - -
Bpe12g00543 410 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 MobiDBLite consensus disorder prediction 297 317 - -
Bpe12g00543 410 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 PANTHER CYCLIC DOF FACTOR 1 5 409 - -
Bpe12g00543 410 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Bpe12g00543 410 PANTHER CYCLIC DOF FACTOR 2 5 409 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00543 Bpe-Chr12:11292910 Bpe14g00173 Bpe-Chr14:2111758 1.04E-87 wgd
Bpe12g00543 Bpe-Chr12:11292910 Bpe02g01453 Bpe-Chr2:17881393 1.68E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22208 PF02701 zf-Dof 2.20E-31 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00543 - - jre:109000197 370.163