Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00547 ATGGGACGGAATTGGAGCGCAATCAATGAAGAATTAGGGTTCCAAGAAAAGATTATATTCGGAGAAAATGGAGGAATGGAAATGAAAACGAGGGAGGAGAAGAAGGGTAATAAGAGGAGCAGAGAAGATAAAAGTAGTAGTTCTAAAGCGCTGTCAAGAACTACTATTTCTCAATATTTTTACATGCCTATAACTCAAGCGGCGAAAGAGCTAAACGTGGGTTTAACTTTTCTGAAGAAAAGATGCAGAGAATTAGGTATCCGCAGATGGCCTCACAGGAAGTTGATGAGTCTCCAAACCCTAATCAAGAACGTTCAGGATTTGAGCAAGGATGATGGCGATGAAACAGAAGCGAAGCTAAGGGATGCAGTAGAATTACTGAAGAGAGAGAGGACGATGATGGAAGAAATGCCGGATTTGCAGCTGGAAGACAACACAAAGAGGCTCAGACAGGCTTGTTTCAAGGCCAACTACAAGAAGAGGAAGATAATGGGTATGGAGGAATCACAGTCGTCTCCTTCAACCGCCAATTTGGATAGCATTGAAGAAGTAGAATTCGAAGAGGATGAAGAAATGAAATCTCTCTTGTCTCAGTGCTCCTTCTCGTCTTCTTCTGGCTTCATCTTTTAG 630 42.22 MGRNWSAINEELGFQEKIIFGENGGMEMKTREEKKGNKRSREDKSSSSKALSRTTISQYFYMPITQAAKELNVGLTFLKKRCRELGIRRWPHRKLMSLQTLIKNVQDLSKDDGDETEAKLRDAVELLKRERTMMEEMPDLQLEDNTKRLRQACFKANYKKRKIMGMEESQSSPSTANLDSIEEVEFEEDEEMKSLLSQCSFSSSSGFIF 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11306859 11307567 - Bpe005811.1 Bpe12g00547 112560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00547 209 ProSiteProfiles RWP-RK domain profile. 32 118 IPR003035 -
Bpe12g00547 209 Pfam RWP-RK domain 51 98 IPR003035 -
Bpe12g00547 209 MobiDBLite consensus disorder prediction 26 48 - -
Bpe12g00547 209 PANTHER PROTEIN RKD4 26 175 IPR044607 GO:0003700
Bpe12g00547 209 PANTHER PROTEIN RKD1-RELATED 26 175 - -
Bpe12g00547 209 MobiDBLite consensus disorder prediction 25 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00349 Bpe-Chr12:8548588 Bpe12g00547 Bpe-Chr12:11306859 2.10E-30 dispersed
Bpe12g00547 Bpe-Chr12:11306859 Bpe15g00652 Bpe-Chr15:17274009 1.46E-09 dispersed
Bpe12g00547 Bpe-Chr12:11306859 Bpe13g00230 Bpe-Chr13:10307323 4.22E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22209 PF02042 RWP-RK 2.90E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00547 - - qlo:115964427 217.624