Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00558 ATGCCTGGAAGTATAATTGAGATCGAGCTTTACAACTTTATGACCTTCAATCACTTAAAATGCAAACCGGGATCACGATTGAACCTTGTTATTGGTCCTAATGGATCTGGAAAAAGCTCAATTGTTTGTGCCATTGCACTTGGTCTCGGTGGCGAGCCTCAGCTTCTTGGGAGAGCCACAAATATTGGTGCATTTGTGAAACGTGGAGAGGAGTCTGGCTATATAAAAATTACCTTGAGAGGCGAGACTAAAGAAGAGCAGATTGCCATCATGCGGAGAATGGACACTCGCAATAAGTCTGAGTGGTTGTTCAATGGAAAAGTGGCTCCAAAAAAAGAAGTATCCGCAATTATACAAAGGTTCAACATCCAAGTTAATAATTTGACTCAATTTTTGCCACAGGACAGGGTTTGTGAGTTTGCAAAACTAACTCCTGTGCAACTTCTAGAAGAGACTGAAAAAGCCATTGGCGATACTCAACTTCCAGGCCAACATCGTGCACTTGTTGAAAAGAGCCGTGAAATAAAGAATATAGAGCGGGCTGTGGAAAAAAATGGGGACACATTGAATCAGTTGAAGGCACTAAATGCTGAGCTAGAGAAGGATGTTGAGCGTGTTCGTCAAAGGGAAATACTTCTAGCAAAGGCAGATATCATTTTTTGTTTTTTTTCTTTTCAACCATCGGCTGAGTCCTTGAAAAAGAAATTGCCGTGGCTTAAGTATGATATAAAGAAGGTTGAATATATAGAATTAAAGGAGAAGGAGAATGATGCCAAAAAGAAGTTGGATGAAGCAGCAACGACATTAAATGGTCTCAAAGAACCCATTGAGAAACATAAAAAGGAGAAAGCAGCGGTGGATGCTAAAAGCAAAAAAATTAGCAATATCATGAATAATAATACGAGAAAACGAATCGAGCTTCTAGATAATGAAAACCATTTGGGGGTAGAAATACAAAGCAAGTACAAAGAAATGGGAGATTTGAGGAAGCAAGAAGAGTCTCGGCAACAAAGAATTATGCAAGCTAAGGAGGAACTTGTTGCAGCTGAACTAGAGCTTCAAAATTTGCGTCCTTATTGTGTTCCAAGGGAGGATATTGAAAGATTAGCTAGTCAAATAATGGATCTTGAACTTTCTGCAAATCAAAAGAGGTTGTCTAAGACAGAGAGCGAAAAAGTCTTAGCTCAGAAAAGGATAGCCTTGAGACAGTGCTTAGACAGGTTAAAGGATATGGAAAGCAAACATACTAAACTTTTGCAGGCATTGAAAAATTCTGGAGCTGATAAAATTTCTGATGCTTACCACTGGTTGCAAGAACATCGCCATGATTTCAACAAGGAGGTTTATGGTCCAATTTTGCTTGAGGTTAATGTTTCTAATCAGATTCATGCTGACTACTTGGAAAGTCAAACCCCTCATTACATCTGGAAGCTTTTATTTCTTTTGGTTTTTGACTTGCAGTCTTTTGTAACTCAAGATTCTAACGATCGTGACCTTTTGGTCAAATGTTTCAAATCATTTGATGTTCCCATTTTGAATTACGTGGATGATGAGGGTTGTCGAAAAGAAAAATTTGAAATTACTGAGGAGATGCGCAAACTTGGCATCTATTCCAGGCTTGACCAAGTTTTTGATGCTCCCAACTCTGTGAAGGAAGTTTTGATCAGTCAGTTTGCTTTGGATCGCTCATATATTGGTTCTAAGGAGACTGATCAGAAGGCAGATGCAGTTTCAAAATATGGAATTTTAGATTTTTGGACTCCAGAAAATCACTATCACTGGTCTGTATCCAGATACGGTGACCATATGACTGGAAATGTGGAACCAGTGGAGCGCTCTCGTCTTCTTCTATGCAATAAGGATGTGGGTGAAGTTGATGGTATGAGATTGAGGAAAAGTGAACTGGAAGAATCTGTCGCAGCTTTAGAAGAAAGCCACAAGTTTTTTCAGATTGAGATAAGAAACATAGAAAATGAAACAGCTAAACTTCGTAAACAACGGGAGGACATTATCAGCATTGTGCACCAGGAGAAGAGGAAGCGTCAGGAAATGGAAAATCGTATCAATCAAAGGAAAAAGAAACTAGAATCTATGACACAAGAGGAAGACTTGGAGACTTCCATAGCGAAGCTTAATGATCAAGCCGCAGGTATATCTATTCAACGGTTCCGATGTGCAATAGAGATTAAGAATCTACTTGTAGATACTGTATCCCACCGACGAAGTTTTGCTCTACATCATTTGTCATCAATTGAATTTGATGCTAAGATTAGAGACATGGAATTCAATATGAAGAAACAGGAGAAGGATGCTATGCAAGCATCATTGCACTTAGAGAATTGTAAGAAGGAAGTAGAGGATTGTAGACAGCAACTGTCAGTTGCTAAGAGGCATGCGGAATCAATTGCTGTGATCACTCCTGAACTTAAAAAGGATTTTCTTGAGATGCCAACTACAATCGAAGAATTGGAGACCGCAATTCAAGACAATATTTCTCAAGCTAATTCTATTTTATTCTTGAACCACAACATATTAGAGGAGTATGAACATAGACAGAGTCAGATAGGAAGCATTGCAACAAAACTTGTAACTGATCAAGAGGAGCTCAAAAGGCGGGTCACTGAAGTTGATGATCTCAAGAAAAATTGGCTTCCTACTTTGAGAACCCTTGTTACTCAGATTAATGAGACCTTCAGTCGCAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTCTCGTTGGATGAGCATGGCATGGACTTCGATAAATTTGGAATTCTTATAAAAGTTAAGTTCAGACAATCAGGACAGCTTCAGGTTCTCAGTGCTCACCATCAGTCTGGCGGGGAACGCTCAGTTTCAACAATTCTTTATCTTGTATCTCTTCAAAACCTTACCAACTGCCCGTTTAGGGTGGTTGATGAGATAAATCAAGGAATGGATCCAATTAATGAAAGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCTAGCCAACCAAATACACCACAGTGTTTTTTATTGACCCCAAAGTTACTACCAGATTTAGTATATAGTGAGGCTTGCAGTATCTTGAATATCATGAACGGTCCCTGGATTGAGGATCCCTCCAAAGTGTGGAGTAGTGGAGACCGCTGGGCAGCGGTCATGGGGTTGGTTGGAGAAAGTAGATCCTGA 3171 39.77 MPGSIIEIELYNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATNIGAFVKRGEESGYIKITLRGETKEEQIAIMRRMDTRNKSEWLFNGKVAPKKEVSAIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAIGDTQLPGQHRALVEKSREIKNIERAVEKNGDTLNQLKALNAELEKDVERVRQREILLAKADIIFCFFSFQPSAESLKKKLPWLKYDIKKVEYIELKEKENDAKKKLDEAATTLNGLKEPIEKHKKEKAAVDAKSKKISNIMNNNTRKRIELLDNENHLGVEIQSKYKEMGDLRKQEESRQQRIMQAKEELVAAELELQNLRPYCVPREDIERLASQIMDLELSANQKRLSKTESEKVLAQKRIALRQCLDRLKDMESKHTKLLQALKNSGADKISDAYHWLQEHRHDFNKEVYGPILLEVNVSNQIHADYLESQTPHYIWKLLFLLVFDLQSFVTQDSNDRDLLVKCFKSFDVPILNYVDDEGCRKEKFEITEEMRKLGIYSRLDQVFDAPNSVKEVLISQFALDRSYIGSKETDQKADAVSKYGILDFWTPENHYHWSVSRYGDHMTGNVEPVERSRLLLCNKDVGEVDGMRLRKSELEESVAALEESHKFFQIEIRNIENETAKLRKQREDIISIVHQEKRKRQEMENRINQRKKKLESMTQEEDLETSIAKLNDQAAGISIQRFRCAIEIKNLLVDTVSHRRSFALHHLSSIEFDAKIRDMEFNMKKQEKDAMQASLHLENCKKEVEDCRQQLSVAKRHAESIAVITPELKKDFLEMPTTIEELETAIQDNISQANSILFLNHNILEEYEHRQSQIGSIATKLVTDQEELKRRVTEVDDLKKNWLPTLRTLVTQINETFSRNFQEMAVAGEVSLDEHGMDFDKFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQNLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLVYSEACSILNIMNGPWIEDPSKVWSSGDRWAAVMGLVGESRS 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11422644 11444647 - Bpe005822.1 Bpe12g00558 112571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00558 1056 CDD ABC_SMC5_euk 929 1031 - -
Bpe12g00558 1056 Coils Coil 325 352 - -
Bpe12g00558 1056 Coils Coil 394 414 - -
Bpe12g00558 1056 Coils Coil 248 268 - -
Bpe12g00558 1056 Coils Coil 674 701 - -
Bpe12g00558 1056 Pfam RecF/RecN/SMC N terminal domain 5 996 IPR003395 -
Bpe12g00558 1056 Coils Coil 178 209 - -
Bpe12g00558 1056 CDD ABC_SMC5_euk 3 149 - -
Bpe12g00558 1056 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1053 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bpe12g00558 1056 Coils Coil 625 666 - -
Bpe12g00558 1056 Gene3D - 850 1028 IPR027417 -
Bpe12g00558 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 999 IPR027417 -
Bpe12g00558 1056 Coils Coil 764 798 - -
Bpe12g00558 1056 Gene3D - 4 200 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00558 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1525.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00360 Bpe-Chr3:8598346 Bpe12g00558 Bpe-Chr12:11422644 3.96E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00558 . 1 1047 Structural Maintenance of Chromosomes family AT5G15920 64.4 0.0e+00 1300.4
Bpe03g00360 . 16 1013 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1146.7
Bpe03g00360 . 13 1013 Structural Maintenance of Chromosomes family AT5G61460 62.7 0.0e+00 1204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00558 Bpe_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0