Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00560 ATGGCTCAAAGGGTAAAAGTGACAAGTCTAACTCTCTTAGAGATTCAAAGCAAGTTCGATATACTGGTTCTGATGGCATATCATCTGATAGCCGAGTCAGCAAATGTAGAGTATATTTCTAAAAGTTCCAACAGTGTAAAAGCTGCAGCCCCAAAGACAAAGCAGTTTGGAAATACGTTGCAAGTTTACGACAGTGTTTCTCATATACTAAGACACCAAAAATGGGGCCCTTCTGCTGAAGAAGCTCTTGGAAAGCTTAATTGTTCGATAGATGCCTTTCAAGCAAACCAAATTTTAAAGCAGTTACAAGATCATTCCGTTGCTCTTGGCTTTTTCCATTGGTTAAAGCGGCAATCAGGCTTCAGGCATGATGGGCACACTTATACCACTATGGTCGGCATCCTTGGTCGTGCCAGACAATTTGATGCGATCGACAGACTACTTGATCAGATGGTCAAGGATGGTTGCCAGCCTAATGTCGTGACTTATAACCGTCTGATTCATTGTTATGGTCGAGCTAACTTCTTGAAAGAAGCTATTTATGTGTTCAATCAAATGCACGAAGTTGGATGCGAACCAGACCGAGTTACCTTCTGCACGCTCATCGACATCCATGCAAAAGCCGGATTTCTTGATATTGCAATGTGCATGTATAAGAAAATGCAGGAGGCTGGACTTAGCCCGGATACTTTTACTTACAGTGTGATAATCAATTGCCTTGGAAAAGCTGGTCATCTGAATGCTGCCCATAGGATTTTCTGCGAAATGGTCGATCAGGGGTGTGTTCCCAATTTAGTCACCTATAATATTATGATTGCTCTGCAAGCCAAAGCCAGGAACTATAACATTGCATTGAAGCTTTATAGGGACATGCAGAATGCTGGTTTTCAGCCTGACAAAGTGACATACAGCATAGTCATGGAGGTGCTTGGCCATTGTGGCTACCTTGAGGAGGCAGAAGCTGTGTTTGTTGAGATGAGACAGCAGAATTGGGTGCCAGATGAGCCTGTTTACGGACTTTTGGTAGACTTGTGGGGAAAGTCCGGTAATGTTGAAAAAGCTTGGGAGTGGTATCATTCTATGCTCAGTGCCGGTTTGAAGCCAAACGTTCCGACCTGCAATTCTATGCTCAGTGCTTTCCTCAGAGTCCACCGACTCTCGGATGCCTACAATTTGCTGCAAACAATGGTTTCTTTGGGTCTAAAACCTTCCCTTCAAACATACACTTTACTACTCAGTTGCTGCACAGATGCAAAATCATCATTCAACATGGGATTTTGTTGTGAATTAATGGCCATTACAGGCCATCCGGCTCATAAATTTCTTGTTTCTCTGCCCTCGCCCGGACCCACAGGCCAAAATGTTCAAGATCACATGAGCAAGTTTTTAGATATGGTGCATAGTGAGGATAGAGAGAGCAAGAGAGGGATTGTAGATGCAGTGGTGGATTTTCTTCACAAATCGGGACTTAAAGAAGAGGCCGGGTCGGTTTGGGAGGCAGCTGTTCTGAAAAACGTCTACCCAGATGCCGTGAGGGAGAAAAGCTCGTGCTATTGGCTCATCAACCTGCATGTGATGTCTGATGGTACCGCAGTGACAGCTCTGTCCCGGACACTGGCATGGTTCCGCCGTCAAATGATGATGTCGGGGGTTGGTCCTGTCCGGATCGATATCGTGACCGGGTGGGGCCGGCGAAGCCGGGTGACAGGTAATTCTCTCGTGAGACAATCTGTTCAAGAGCTTCTTCGCATTTTTAGCTTTCCGTTTTTCAATGAGAATGGGAATTCTGGATGTTTTGTTGGATGTGGGGAGCCTCTCAATAGATGGTTGCTCCAATCTTATGTTGAGAGAATGCATTTACTCTGA 1866 45.02 MAQRVKVTSLTLLEIQSKFDILVLMAYHLIAESANVEYISKSSNSVKAAAPKTKQFGNTLQVYDSVSHILRHQKWGPSAEEALGKLNCSIDAFQANQILKQLQDHSVALGFFHWLKRQSGFRHDGHTYTTMVGILGRARQFDAIDRLLDQMVKDGCQPNVVTYNRLIHCYGRANFLKEAIYVFNQMHEVGCEPDRVTFCTLIDIHAKAGFLDIAMCMYKKMQEAGLSPDTFTYSVIINCLGKAGHLNAAHRIFCEMVDQGCVPNLVTYNIMIALQAKARNYNIALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGYLEEAEAVFVEMRQQNWVPDEPVYGLLVDLWGKSGNVEKAWEWYHSMLSAGLKPNVPTCNSMLSAFLRVHRLSDAYNLLQTMVSLGLKPSLQTYTLLLSCCTDAKSSFNMGFCCELMAITGHPAHKFLVSLPSPGPTGQNVQDHMSKFLDMVHSEDRESKRGIVDAVVDFLHKSGLKEEAGSVWEAAVLKNVYPDAVREKSSCYWLINLHVMSDGTAVTALSRTLAWFRRQMMMSGVGPVRIDIVTGWGRRSRVTGNSLVRQSVQELLRIFSFPFFNENGNSGCFVGCGEPLNRWLLQSYVERMHLL 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11456101 11458040 + Bpe005824.1 Bpe12g00560 112573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Smr domain profile. 521 602 IPR002625 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Bpe12g00560 621 PANTHER OS03G0856100 PROTEIN 35 621 - -
Bpe12g00560 621 SUPERFAMILY SMR domain-like 519 599 IPR036063 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 196 230 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 126 160 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 161 194 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Bpe12g00560 621 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Bpe12g00560 621 Pfam PPR repeat 337 366 IPR002885 -
Bpe12g00560 621 PANTHER BNAA07G31720D PROTEIN 35 621 - -
Bpe12g00560 621 Pfam PPR repeat 225 257 IPR002885 -
Bpe12g00560 621 Gene3D Tetratricopeptide repeat domain 221 361 IPR011990 GO:0005515
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Bpe12g00560 621 Pfam PPR repeat family 368 415 IPR002885 -
Bpe12g00560 621 Pfam PPR repeat family 263 309 IPR002885 -
Bpe12g00560 621 Pfam Pentatricopeptide repeat domain 146 204 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Bpe12g00560 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Bpe12g00560 621 Gene3D Tetratricopeptide repeat domain 58 220 IPR011990 GO:0005515
Bpe12g00560 621 Gene3D Tetratricopeptide repeat domain 362 423 IPR011990 GO:0005515
Bpe12g00560 621 SMART SMR_2 518 604 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00560 - - - tcc:18604576 1006.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00797 Bpe12g00560 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00368 Bpe-Chr9:4023968 Bpe12g00560 Bpe-Chr12:11456101 8.26E-16 dispersed
Bpe12g00560 Bpe-Chr12:11456101 Bpe02g02079 Bpe-Chr2:22303878 7.05E-28 dispersed
Bpe06g00060 Bpe-Chr6:709375 Bpe12g00560 Bpe-Chr12:11456101 5.55E-14 transposed
Bpe06g00244 Bpe-Chr6:12860806 Bpe12g00560 Bpe-Chr12:11456101 1.59E-07 transposed
Bpe07g00221 Bpe-Chr7:1561873 Bpe12g00560 Bpe-Chr12:11456101 7.12E-47 transposed
Bpe07g00470 Bpe-Chr7:7566798 Bpe12g00560 Bpe-Chr12:11456101 2.91E-43 transposed
Bpe15g00773 Bpe-Chr15:18055252 Bpe12g00560 Bpe-Chr12:11456101 2.56E-06 transposed
Bpe12g00560 Bpe-Chr12:11456101 Bpe07g00797 Bpe-Chr7:14352237 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00560 Bpe_Chr12 FPKM 37.199299 39.820992 41.573723 41.490192 48.549957 51.935318 47.586498 24.064295 22.733198 23.64677