Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00567 ATGGATCCTCCCCTAGTAAACGAGTCTTCCTTCTCGGCCGCCAACCCGTCTGCTTACAGCTTGGCTGAGATTTGGCCGTTCAGCGGAGCATCCGACGGAGTACTGGGACTACGAACCGGTAATTTGGGTCGAAATAATGGTGGGTTAGCTGAGGGTTCTGGAAATCGTGATGGGTCGGCGGAGGAATCGACAGTGACTGGGCAGAGCGGGGGCGGAGGGAAGAGGAAGAGGGTGGATGTGAGCTCGGAGGATGAGTCTTCGAAAATGCATGAATTGAGTGGTAAAAGAATGAAAATGGGGGAATCCAGAGATGAGAATGGTGGTGCGAAAGCTGAAGAAACAAGCTCAGCTAATGGTAACAAACCCGGCGAACCAATCTCTAAAACATTGGAGCCACCTAAAGATTATATTCACGTGAGAGCGAGGAGAGGCCAAGCTACCGATAGCCACAGTCTGGCAGAACGAGCTAGGAGAGAGAAAATTAGTGAGAGAATGAAAATCCTTCAAGACTTGGTTCCAGGATGTAATAAGGTTATTGGAAAGGCACTCGTTCTCGATGAGATTATCAATTACATTCAATCCTTGCAGCGTCAGGTCGAGTTTCTGTCGATGAAGCTTGAAGCAGTTAATTCAAGAATAAACAGGAACCCAGGCAATGAAGGCTATACTACCAACGATAATGGAACCCAGGAATTTGATGCTGCAGGAATGATACATGGTTCCCAAGCAATACCAAGAGAATATGGTCAAGGTCAAGGCTTACAACCTGAATGGCTCCATATGCAAATTGGTGGTGCTGGTTTTGAAAGAGCAAATTAA 819 47.13 MDPPLVNESSFSAANPSAYSLAEIWPFSGASDGVLGLRTGNLGRNNGGLAEGSGNRDGSAEESTVTGQSGGGGKRKRVDVSSEDESSKMHELSGKRMKMGESRDENGGAKAEETSSANGNKPGEPISKTLEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRINRNPGNEGYTTNDNGTQEFDAAGMIHGSQAIPREYGQGQGLQPEWLHMQIGGAGFERAN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11510494 11513106 + Bpe005831.1 Bpe12g00567 112580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00567 272 Coils Coil 192 212 - -
Bpe12g00567 272 Gene3D - 142 217 IPR036638 GO:0046983
Bpe12g00567 272 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 270 - -
Bpe12g00567 272 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 270 IPR024097 GO:0006355
Bpe12g00567 272 SMART finulus 151 201 IPR011598 GO:0046983
Bpe12g00567 272 MobiDBLite consensus disorder prediction 30 133 - -
Bpe12g00567 272 MobiDBLite consensus disorder prediction 76 110 - -
Bpe12g00567 272 CDD bHLH_AtBPE_like 135 217 - -
Bpe12g00567 272 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Bpe12g00567 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Bpe12g00567 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 213 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00808 Bpe12g00567 CCT
Bpe07g00808 Bpe12g00567 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00567 Bpe-Chr12:11510494 Bpe13g00756 Bpe-Chr13:14089584 1.18E-46 dispersed
Bpe12g00567 Bpe-Chr12:11510494 Bpe13g00471 Bpe-Chr13:12200788 1.57E-74 wgd
Bpe12g00567 Bpe-Chr12:11510494 Bpe07g00808 Bpe-Chr7:14414093 5.09E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22217 PF00010 HLH 2.20E-08 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00567 - - zju:107418528 351.288