Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00570 ATGGTGTCTTCCTCTTCTCAGAAGAAAACCTTCCATTCTCTCCTCGCTTCCAACCTCACAAAGCTTACTATCCCTGCTTCTTCTTCTTCTTCTTCCCCATCTTCTTCCTCGGCTACCACCCACCACGACTTCGAGTTTTCCGACCTTTTTGGCCCTCCCGTCTCCTCCCCATCCGCTTCCTCCTCATTCCAGAGAGATCCACTACAACCTCAGCTGCAAGTGATTCATAATCGATCCCATTCCTTTGTCGGTCCCTCTCCTCGCTTCGCTCCTTCCTCGTCACTCCCCCTTCACCGGGAACTTGTTTCGCAGAGTGAGGAGGAAGACGGTGAAGAAGCAGATGATGAAATTCCAGTTATTAATGGAGCTCTAAATGATGAGAGAAAGAATGAAATCCAGAACAGTGATGGAAATAAAGTGGTGGGTAAGATCGGGCCTGCCGATTTTGAGATTCTTAGAGTTGTCGGTAAGGGTGCGTTTGGAAAGGTCTTTCTGGTGAAGAAGACGGTGGACGATAGTGGAGATAGTGATGGGATTTACGCAATGAAAGTGATGAGAAAGGACACTATTATAAAGAAGAATCATGTTGATTATATGAAGGCTGAGAGAGACATTCTTACCAAAGTTGTGCATCCCTTCATTGTTCAGCTCCGCTACTCTTTCCAGACCAAAGCAAAGCTCTATTTGATTCTCGATTTCATAAATGGAGGGCATCTCTTCTTTCATCTCTACCGACAGGGCCTTTTCAGTGAGGACCAGGCAAGGATGTATACTGCAGAGATTGTATCTGCTGTTTCACATCTGCACAGTTGTGGAATTGTGCATCGGGATCTCAAGCCTGAAAATATTCTAGTTGATTCAGACGGGCATGTTATGCTAACAGACTTTGGGCTTGCCAAGGAAATTGATGAATCAAGCAGGTCAAATTCATTGTGCGGAACGACAGAGTACATGGCTCCCGAAATTTTACTGAATAAAGGGCACAACAAAGATGCTGATTGGTGGAGTGTCGGGATACTCTTATACGAAATGCTTTCTGGGCAGCCTCCATTTACACATTCAAATAGGAAGAAGCTTCAAGAGAAAATTATCAAAGACAAAGTGAAACTTCCACCTTATCTCAGCAGTGAAGCACACTCTTTACTTAAAGGACTACTTCAAAAGGAACCATCGAACAGATTAGGAAGTGGGTCAAATGGAGCAGATAAGATAAAAAGTCATAAATGGTTTCAACCAATCAACTGGAAGAAATTGGAGGCCAGAGAAATGCAACCGAAGTTCAAGCCCGATGTAACCGGAAAAGATTGTACAGCCAATTTCGACCGCTGCTGGACGGTAATGCCTCCGGATGACTCACCAGCTCCAACACCAACTTCAGATGAACATTTCCAGGGATATACTTATGTTGCTCCTAATCCTTGGCTTTCTTCATCGGGGTAA 1440 44.58 MVSSSSQKKTFHSLLASNLTKLTIPASSSSSSPSSSSATTHHDFEFSDLFGPPVSSPSASSSFQRDPLQPQLQVIHNRSHSFVGPSPRFAPSSSLPLHRELVSQSEEEDGEEADDEIPVINGALNDERKNEIQNSDGNKVVGKIGPADFEILRVVGKGAFGKVFLVKKTVDDSGDSDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVVHPFIVQLRYSFQTKAKLYLILDFINGGHLFFHLYRQGLFSEDQARMYTAEIVSAVSHLHSCGIVHRDLKPENILVDSDGHVMLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLNKGHNKDADWWSVGILLYEMLSGQPPFTHSNRKKLQEKIIKDKVKLPPYLSSEAHSLLKGLLQKEPSNRLGSGSNGADKIKSHKWFQPINWKKLEAREMQPKFKPDVTGKDCTANFDRCWTVMPPDDSPAPTPTSDEHFQGYTYVAPNPWLSSSG 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11520406 11523462 + Bpe005834.1 Bpe12g00570 112583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00570 479 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 477 - -
Bpe12g00570 479 Pfam Protein kinase domain 149 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00570 479 MobiDBLite consensus disorder prediction 24 67 - -
Bpe12g00570 479 Pfam Protein kinase C terminal domain 431 468 IPR017892 GO:0004674|GO:0005524|GO:0006468
Bpe12g00570 479 ProSiteProfiles Protein kinase domain profile. 149 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00570 479 Gene3D Transferase(Phosphotransferase) domain 1 234 429 - -
Bpe12g00570 479 Gene3D Phosphorylase Kinase; domain 1 147 453 - -
Bpe12g00570 479 SMART pkinase_C_6 411 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bpe12g00570 479 SMART serkin_6 149 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00570 479 MobiDBLite consensus disorder prediction 53 67 - -
Bpe12g00570 479 SUPERFAMILY Protein kinase-like (PK-like) 148 473 IPR011009 -
Bpe12g00570 479 MobiDBLite consensus disorder prediction 24 43 - -
Bpe12g00570 479 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 477 - -
Bpe12g00570 479 MobiDBLite consensus disorder prediction 101 128 - -
Bpe12g00570 479 ProSitePatterns Protein kinases ATP-binding region signature. 155 183 IPR017441 GO:0005524
Bpe12g00570 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Bpe12g00570 479 ProSiteProfiles AGC-kinase C-terminal domain profile. 411 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00975 Bpe-Chr3:29275513 Bpe12g00570 Bpe-Chr12:11520406 3.70E-160 dispersed
Bpe04g01652 Bpe-Chr4:22632703 Bpe12g00570 Bpe-Chr12:11520406 1.85E-64 dispersed
Bpe04g01911 Bpe-Chr4:24079830 Bpe12g00570 Bpe-Chr12:11520406 1.16E-66 dispersed
Bpe12g00570 Bpe-Chr12:11520406 Bpe12g00646 Bpe-Chr12:12105926 1.68E-62 dispersed
Bpe12g00570 Bpe-Chr12:11520406 Bpe04g01311 Bpe-Chr4:19547159 5.35E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63632 PF00069 Pkinase 5.40E-74 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00570 K04688 - csv:101214867 712.22