Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00577 ATGGCAATTCCGATACCCAGTAGACAGCTTTTCATCGACGGAGAATGGAGAGAACCAGTTCTTAAGAAACGCATCCCCATCATCAATCCTGCCACTGAAGAAATCATCGGTATCTCTCTCTCTCTCTCTGTGAGAAGTTTTATGGGTCAGTCTATGATTTGTGCTTTAGGGGATATTCCTGCAGCAACTGCAGAGGATGTAGAGCTAGCTGTAAATGCAGCCAGGAGAGCCCTTGCCAAAAACCAAGGGGGTGAATGGGCCTCTTCTTCTGGAGCTGTTCGCTCAAAGTATTTGCGCGCCATCGCTGCCAAGGTAGTGGAGAAGAAATCTGAACTGGCAAAGCTCGAAGCAATTGATTGTGGAAAACCTCTGGATGAAGCTGCCTGGGATATGGATGATGTAGCTGGGTGTTTTGAGTACTACGCAGACCTTGCTGAAGGTTTGGATGCCAAGCAAAAGGCACCACTTTCCCTTCCTATGGATTCATTCAAGAGCTATGTTCTCAAGGAACCCATTGGAGTGGTTGGGTTGATTACTCCATGGAACTATCCTCTACTGATGGCTGCATGGAAAGTGGCTCCTGCATTGGCTGCTGGATGTGCTGCAATTCTCAAGCCATCGGAATTGGCTTCTGTGACTTGTTTGGAACTGGCTGAAATATGTAACAGTATCGGCCTTCCTCGTGGCGTTCTCAATGTTTTAACTGGAAACGGTCCTGAAGCCGGTGCTCCTTTGGCTTCGCATCCGCACGTTGACAAGATTGCATTTACAGGAAGCACCTCTACAGGGAGCAAGATTATGTCTGCTGCAGCTCAAGTGGTCAAGCCTGTTACACTGGAGCTTGGTGGAAAGAGTCCGATTCTTGTTTTTGAGGACGTTGACTTGGATAAAGCTGCTGAATGGACTGCCTTCGGTTGCTTTTGGACTAATGGTCAGATTTGTAGTGCAACTTCTCGTCTTCTTGTACAAGAAAGCATTGCCCATGATTTTTTGGACAACCTGGTACAATGGTGCAGAAATATTAAAATATCAGATCCTCTGGAAGATGGTTGTCGGCTTGGTCCTGTTGTTAGTAAAGGACAGTATGAGAAAGTATTGAAGTTCATCTCAACCGCCGAGAGTGAAGGTGCAACTATTTTATCGGGTGGGGGTCGTCCGGAGCATCTCAAAAAAGGATTCTTCATTGAACCAACCATCATAAATGGTGTGACTACATCTATGCAAATCTGGAGAGAAGAAGTTTTCGGACCTGTAATTTGTGTCAAAACGTTTAAAACTGAAGATGAAGCAATTGAATTAGCTAATGATAGCCATTATGGGTTAGGTTCGGCTGTGATCTCAAATGACTTAGAAAGGTGTGAGCGGATTTCGAAGGCTTTGCAGGCAGGAATTGTGTGGATCAATTGCTCGCAGCCGTGTTTCTGTCAAGCCCCATGGGGAGGCACCAAGCGTAGTGGTTTTGGTCGTGAATTAGGCGAATGGGGACTGGATAATTATGTGAGCGTGAAGCAGGTTACTCAGTATGTGTCCAGTGAGCCATGGGGATGGTATCAGTCTCCTTCGTCTTCAAAACTCTGA 1578 46.2 MAIPIPSRQLFIDGEWREPVLKKRIPIINPATEEIIGISLSLSVRSFMGQSMICALGDIPAATAEDVELAVNAARRALAKNQGGEWASSSGAVRSKYLRAIAAKVVEKKSELAKLEAIDCGKPLDEAAWDMDDVAGCFEYYADLAEGLDAKQKAPLSLPMDSFKSYVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELAEICNSIGLPRGVLNVLTGNGPEAGAPLASHPHVDKIAFTGSTSTGSKIMSAAAQVVKPVTLELGGKSPILVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVQESIAHDFLDNLVQWCRNIKISDPLEDGCRLGPVVSKGQYEKVLKFISTAESEGATILSGGGRPEHLKKGFFIEPTIINGVTTSMQIWREEVFGPVICVKTFKTEDEAIELANDSHYGLGSAVISNDLERCERISKALQAGIVWINCSQPCFCQAPWGGTKRSGFGRELGEWGLDNYVSVKQVTQYVSSEPWGWYQSPSSSKL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11564836 11569758 - Bpe005840.1 Bpe12g00577 112590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00577 525 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 56 520 - -
Bpe12g00577 525 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 37 - -
Bpe12g00577 525 CDD ALDH_F10_BADH 27 507 - -
Bpe12g00577 525 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 307 318 IPR016160 GO:0016491
Bpe12g00577 525 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 478 IPR016163 GO:0016620
Bpe12g00577 525 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 56 503 IPR016162 GO:0016491
Bpe12g00577 525 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 56 520 - -
Bpe12g00577 525 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 37 - -
Bpe12g00577 525 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 279 286 IPR029510 GO:0016491
Bpe12g00577 525 SUPERFAMILY ALDH-like 6 506 IPR016161 GO:0016491
Bpe12g00577 525 Pfam Aldehyde dehydrogenase family 56 505 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00577 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - jre:108999250 887.486
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00817 Bpe12g00577 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00577 Bpe-Chr12:11564836 Bpe12g00589 Bpe-Chr12:11666187 1.47E-117 dispersed
Bpe12g00577 Bpe-Chr12:11564836 Bpe13g00279 Bpe-Chr13:10685412 7.26E-11 wgd
Bpe12g00577 Bpe-Chr12:11564836 Bpe07g00817 Bpe-Chr7:14464866 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00466 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.5 4.2e-217 750.7
Bpe01g00522 . 16 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.0 3.0e-215 744.6
Bpe02g02054 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 67.2 1.8e-183 639.0
Bpe13g01081 . 2 450 Aldehyde Dehydrogenase Gene Family AT3G24503 66.6 3.5e-179 624.8
Bpe11g01767 . 7 496 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 2.2e-157 552.4
Bpe12g00589 . 29 513 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.5e-155 545.0
Bpe13g01458 . 84 569 Aldehyde Dehydrogenase Gene Family AT3G24503 54.0 1.1e-153 540.0
Bpe13g00492 . 18 528 Aldehyde Dehydrogenase Gene Family AT3G24503 52.5 1.5e-153 539.7
Bpe12g00589 . 2 513 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 5.5e-247 850.1
Bpe13g01458 . 56 569 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 5.0e-240 827.0
Bpe13g00492 . 3 528 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 5.5e-239 823.5
Bpe11g01767 . 3 496 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 3.4e-233 804.3
Bpe08g00466 . 4 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.1 5.2e-165 577.8
Bpe01g00522 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.1 9.9e-164 573.5
Bpe02g02054 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.0 1.3e-147 520.0
Bpe13g01081 . 3 450 Aldehyde Dehydrogenase Gene Family AT3G48000 53.0 7.9e-145 510.8
Bpe13g00492 . 1 372 Aldehyde Dehydrogenase Gene Family AT1G23800 75.9 9.5e-167 583.2
Bpe11g01767 . 1 345 Aldehyde Dehydrogenase Gene Family AT1G23800 77.7 2.9e-163 571.6
Bpe12g00589 . 17 357 Aldehyde Dehydrogenase Gene Family AT1G23800 77.4 4.9e-163 570.9
Bpe13g01458 . 65 413 Aldehyde Dehydrogenase Gene Family AT1G23800 77.8 4.6e-161 564.3
Bpe01g00522 . 6 346 Aldehyde Dehydrogenase Gene Family AT1G23800 51.6 1.6e-102 369.8
Bpe08g00466 . 5 346 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 2.0e-100 362.8
Bpe02g02054 CCT 3 322 Aldehyde Dehydrogenase Gene Family AT1G23800 53.1 6.5e-91 331.3
Bpe13g01081 . 3 289 Aldehyde Dehydrogenase Gene Family AT1G23800 56.8 1.2e-89 327.0
Bpe13g00046 . 7 491 Aldehyde Dehydrogenase Gene Family AT4G34240 68.9 5.7e-196 680.6
Bpe04g00009 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 2.0e-177 619.0
Bpe04g00009 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 2.9e-179 624.8
Bpe13g00046 . 78 487 Aldehyde Dehydrogenase Gene Family AT1G44170 66.8 3.0e-160 561.6
Bpe01g00316 . 67 491 Aldehyde Dehydrogenase Gene Family AT1G44170 50.8 9.3e-117 417.2
Bpe13g00428 . 77 486 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 5.3e-112 401.4
Bpe13g00428 . 1 488 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 1.6e-184 642.5
Bpe01g00316 . 1 493 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 5.4e-161 564.3
Bpe07g00475 . 7 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.6 8.6e-237 816.2
Bpe07g00332 . 1 490 Aldehyde Dehydrogenase Gene Family AT1G79440 75.5 1.6e-222 768.8
Bpe05g00420 . 2 492 Aldehyde Dehydrogenase Gene Family AT1G79440 68.7 6.9e-194 673.7
Bpe12g00721 . 3 528 Aldehyde Dehydrogenase Gene Family AT2G14170 76.7 4.4e-229 790.8
Bpe12g00577 CCT 1 521 Aldehyde Dehydrogenase Gene Family AT1G74920 78.5 4.6e-248 853.6
Bpe07g00817 CCT 1 527 Aldehyde Dehydrogenase Gene Family AT1G74920 76.5 3.4e-243 837.4
Bpe12g00577 CCT 1 521 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 3.0e-247 850.9
Bpe07g00817 CCT 1 529 Aldehyde Dehydrogenase Gene Family AT3G48170 74.5 3.4e-243 837.4
Bpe13g01166 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.3 1.1e-262 902.1
Bpe13g00279 . 9 481 Aldehyde Dehydrogenase Gene Family AT5G62530 82.7 1.5e-244 842.0
Bpe04g01114 . 4 599 Aldehyde Dehydrogenase Gene Family AT3G66658 81.5 2.5e-293 1004.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00577 Bpe_Chr12 FPKM 12.98351 11.759055 7.933385 7.690538 18.16958 20.309334 19.832239 1.672023 1.704245 1.354973