Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00585 ATAGAGCTGAATTCGCGAAAGGTTTTTGGGTTAGGGTTCGGATTGATGGTACTCGTCGCGGTTGAATGTGGGATCGAGGCTGGAATTGGGGAAAATGCTAGGCTATGCATGGGAGGGGAGGTGAGGAGAGGAAACGGCCTCGGCACATTTTACCATCCTGGACGGCTCCTTAAATGTAAGTTAAATGGTGTCCTTCTCTTCTCTTTTAAGGATGGACGCAAGATTACTCTTGGCGACTGTGCTCTTTTCAAACCACGGCATGATGCTCCACCTTTCATTGGCATAATACGGTGGTTTGATGTTGACAAAGAAAATAAGTTAAAGTTAGGTGTGAATTGGCTCTATCGACCTTCTGAAGTCCACCTTGGCAAAGGCATCCAATTGGAAGCTGCGCCAAACGAAGTTTTCTATTCCTTTCACAGGGATGCAATTCCTGCTGCATCTTTACTTCATCCGTGTAAAGTTGCATTCCTTCCTAAAGACGCTGAACTCCCATCTGGAATTTTATCATTTGTGTGCCGGCGTGTCTATGACATAACCAACAAGTGCTTATGGTGGTTAAATGATAAGGACTATATTAATGAACGCCAAGAAGAGGTAGACCAGTTATTATTTAGGACGCAAATAGAGATGCATACAACAGTGCATCCTGGTGGCCGATCACCCAAGCCAACATCACAATTAAAAGCTAGTTCGGATAGCAATGCTGTATCTGCTCAGATCAAAGGGAAGAAAAGGGACAGGGGGGATCAGAGCTCTGAGCCCATTAAACGAGAGCGTATTGCAAGAGCTGATGAAGGGGAGTATGGTCACTGCAAACTGGAAAGCTTTTTGAAAGGTGAGATTGCCAAATTTACAGACAAAGGAGGTCTTGTAGACTTGGATGGGGTTGAGAAATTGATTCAGCTAATGCTTCCGGAAGCAAGTGATAAAAAAATAGATTTGGCTGGCAGATCAATACTTGCTGGTGTGATAGCATCAACAGAAAAGGTTGAATGTCTTGGTCAGTTTGTGCATAAGGGTTTGCCTGTTTTTGATGAGTGGCTCCAAGATGTTCACAAAGGAAAATTTGGCGATAGTAGCTGTTCCAAGGAGTGTGATAAGTCCGTTGAAGAATTCCTTTTGATTTTACTCCGGGCACTTGATAAACTTCCTATAAATCTTTTGGCTTTACAAATGTGTAACATCGGAAAATCTGTGAATCATTTACGAACACACAAGAACACAGAAATTCAGAAGAAAGCTAGAAGTTTAGTAGATACATGGAAGAAACGAGTTGAAGCAGAAATGAGTATCAATGATTCAAAGTCGGGTTCGAATCAAAGCGTTCCTTGGACCACAAAACCCCGTCTTTCTGAAGTTTCTCATGGGGGGCGAAACCAAGGTATATCCTCTGAGGCTGCCATGAAGAGTACTGTTACACAGCTTTCTACATCCAAAGCTGCATCAGTTAAGGTTGTGCACGATGAGGTAATTGGCAAGTCTGCTTCTGCTTCTCCTGGCTCTATGAAATCAGTACCATCACCAGCATCAGCTAGTATGACTTCAAAAGATGGAGTTCCCAGAACTCCTGCTGTTAGTAGTGCCAATGATCTTCCTCAAACAGTGGTAAGGGATGAGAAAAGCAGCAGCTCTAGTCAGTCTTACAATAATAGTCAGTCTTGTTCCAGTGAACATGCTAAAACTGGGGGTATGGGAAAGGAGGACGCCAGAAGCTCTACTGCTGGTTCAGTTGCACTGAATAAAGCCCCAGGTGGTTCTTCAAGACAGCGCAAGTCTGTTAATGGCTTCCCTGGCTCGGCTGCATCTGGAGCCCAAAGGGAAACAATATCAGGAAAAAATACTCTGGTGCACAAAGGTACAGCTTCAGAGAGAATATCGCAATGTGGAATTTCATGTGACAAGACGCCAGATTTAACTTTTGGTGAGGGACACGGTCATAAGTTTATTGTTAAGATCACAAATCGTGGTCGGAGCACTGGACTAATTGCCAGTGCTGGATCTGTTGACGACCCTTCATTGTTAAATACTAGGTCCTCTTCTCTTGGTCTTTCTGAGAAGCATGATCATTTTGATTGCAGCTCGAAGGAAAAGGGTGATGCTCATCAAGCTACAGTCATTTCAGGTGTGAATACGGAATCCTGGCAAAGTAATGATATTAAAGATGTAGTATCTAATGATGTGCAGGGTTCCCCTGCTGTTTTTAATGGTGAAGATGGGCGTAGGATTGTAGGGGATACCAAAGCTTCAAAAATTGTTTCCTCATCACCAGTAAATGAAAATAAAACTGTGAATCCGCAGGAGCCTTCTTTGAGCTCAATAAATGCTTTAATTGACAGTTGTGTAAAATACTCTGAAGCTACTGTTTCAACTTCAGCCGGAGATGATGTGGGAATGAACTTACTTGCTAGTGTGGCTGCTGGAGTGATGTCCAAGTCTATCTTAGAATCCCCTACTGATTCTCCACAAAGAAATCTTGCTGCAGTTGATAATTCGTATGTGAAAAATGAATTGAAAGTTAAAGCATCTAATGATGGTGTTAGTGAAAGTAAACAAAATGTTGATGCTAAGTTGACTTCACAGGATAAAGAGAAGTCTGCTGGGGAACCCAATGGACATTTAAGTACTTCTGGTTTAATCATGAATGAAACCACTATGGCATCCCTAGAGGTTAAAGCAGAAAAGAGAGAAAATATTTCAGCTGTCTCCCCTGTAAGCTCATTTGAGAAAACAAAAGAGAGGGATGGAGGTAAACCAGAGAAAACCACCACTGGTGCACTGAATGGAGATATCAAGTTAGAATCTAAAAAAATGTCCAGTTGCTCTTTGACCGATGAAGATATGGTGAATAATAGTGTTCCAACTCAAGATGTTGAGGTGGATATGGTTGAGGGATCGTCTTTATCAAATCCATTGCCTGAGTCTGATGGGAAGAATGGTGGGGAACTGATTGAGAAAAAGGCTTCTTTGGAGAAACACCCTGATTCTGCAGAAGGTACGAACAATGAAGTTCAACATAGTATTGCTTTGGTTGGGGATTTGACCACGGTGAGCTCTAGGGAAATGAATATTGAGAAGAATGATGAAATTGGCGCTGTAATTGATTTTAAACGACCCGTTAAAAAACCTGATTGTGATGGTAATGTTATGCTTGAGATCCAAGGTTTAGCACGGGGTTCAACTGTTCCTAATCATGATGGGGAACACTTGAAAGAGAACTTGAAATGTAAAGATGGTGAACAAAATGGTGGACAAGCTGACCCCAAGGTGGTAGTTGTATTTCCCGTACAAGATGTTGATCAGTGTCTGAAATCTAGGGAATCCAAGTTAAGTGGAATTGAAGCAGAGGAAGCAGATGAATCTACATCTACCACTGCTGATGCTTCTTCTGAATCAGCTGCGGGGATATCTGACAATGATACAAAGGTGGGTTTTGATTTGAATGAAGGCTTTGATGTGGATGATGGGAAATGTGGGGATCCTTCTAGCTCAACAGCATCAGACTGCCTAGCTAATGTTCGGTTAATTAGCCCAGTACCTTTTCCTATATCGGCCGTATCAAGCACCATCCCATCTTCAATTACTGTGGCTGCTGCAGCAAAAGGGCCCTTTGTACCTCCAGAAGACCTATTGAGGAGTAAAGGTGAACTTGGTTGGAAAGGATCAGCCGCCACAAGTGCATTTCGACCAGCTGAACCAAGAAAACATTTGGAGGCGCTGTTCGGTGCAACAAGTACTTCACTTTCTGAGCCCTCAGTGAGAAAAAACAGTCGCCCTCCGTTGGAATTTGACTTGAATATACCCGATGAGAGAATCCTTGAAGATATGAATCCTCGAAGTTTTGCTGCGGTGTCAGTCTCCAACAATAGGGAGAATAATAGTTTGCGACATGAAATAGGTTCGAAATCAGTGCGGTGTTCAGGTGGGTTTGATCTTGATTTAAACCAAGTCAATGAATTTCCTGACGCAAGCAATTACGCAACAAACAATGATCGAAGAATTGACACTGCATTTTCAGTTAAATCAACTGGTAATCCTCTCCGTAATCATTGTATTGTCGAAGGGAGTGTTCGTCGAGATTTTGATTTGAATGGACCATTTATGGATGAAGCAGGGGTTGAATTGTCACATTTTAGTCAGCTAGCCAAGAGCAATGTGCCATCTCAGGCTCCTGTTTCTGGTCTTTGGGTGAATAATGCAGACTTGGGAAACTTATCTTCATGGTTTCCTCCTGGTAACACTTATGCGAATGCGACAATACCTTCAATCATGACTGATAAGGAAGAGCATTCATTCCCTGTTGTTTCCACCTGTGGATCTCAAAGGATGTTGGGTCCCACAAGTGGTGTCAACCCATTTGGCCCTGAGGTTTATCGGGGACCAGTATTGTCTTCAACGCCTGCTGTTCCTTTCCCTTCTGCACCTTTCCAATATTCTGTATTGTCTTTTGCAAACAACTTTCCTTTACCATCAGCCAATTATGCGACTGATGGTAGCAATAGCAGTAGTCCTGAAGTTAGCAAAAAATGGGGAAGACAGGGTTTAGATCTCAATGCTGGACCTGGATGTCCGGATATGGAAGGGAAGGATGAAACTTTTGCTCCCAGGCACCTATCTATTGTTGGTTCTCAGACGCAGCAAGAGGACCGAGTAAGAATGTATCAGCCTGCTGGGAGCGTGGTGAAGAGGAAGGAGCCAGATGGAGGGTGGGATGGCTACAAGCAATCCTCATGGCAATAA 4740 43.04 IELNSRKVFGLGFGLMVLVAVECGIEAGIGENARLCMGGEVRRGNGLGTFYHPGRLLKCKLNGVLLFSFKDGRKITLGDCALFKPRHDAPPFIGIIRWFDVDKENKLKLGVNWLYRPSEVHLGKGIQLEAAPNEVFYSFHRDAIPAASLLHPCKVAFLPKDAELPSGILSFVCRRVYDITNKCLWWLNDKDYINERQEEVDQLLFRTQIEMHTTVHPGGRSPKPTSQLKASSDSNAVSAQIKGKKRDRGDQSSEPIKRERIARADEGEYGHCKLESFLKGEIAKFTDKGGLVDLDGVEKLIQLMLPEASDKKIDLAGRSILAGVIASTEKVECLGQFVHKGLPVFDEWLQDVHKGKFGDSSCSKECDKSVEEFLLILLRALDKLPINLLALQMCNIGKSVNHLRTHKNTEIQKKARSLVDTWKKRVEAEMSINDSKSGSNQSVPWTTKPRLSEVSHGGRNQGISSEAAMKSTVTQLSTSKAASVKVVHDEVIGKSASASPGSMKSVPSPASASMTSKDGVPRTPAVSSANDLPQTVVRDEKSSSSSQSYNNSQSCSSEHAKTGGMGKEDARSSTAGSVALNKAPGGSSRQRKSVNGFPGSAASGAQRETISGKNTLVHKGTASERISQCGISCDKTPDLTFGEGHGHKFIVKITNRGRSTGLIASAGSVDDPSLLNTRSSSLGLSEKHDHFDCSSKEKGDAHQATVISGVNTESWQSNDIKDVVSNDVQGSPAVFNGEDGRRIVGDTKASKIVSSSPVNENKTVNPQEPSLSSINALIDSCVKYSEATVSTSAGDDVGMNLLASVAAGVMSKSILESPTDSPQRNLAAVDNSYVKNELKVKASNDGVSESKQNVDAKLTSQDKEKSAGEPNGHLSTSGLIMNETTMASLEVKAEKRENISAVSPVSSFEKTKERDGGKPEKTTTGALNGDIKLESKKMSSCSLTDEDMVNNSVPTQDVEVDMVEGSSLSNPLPESDGKNGGELIEKKASLEKHPDSAEGTNNEVQHSIALVGDLTTVSSREMNIEKNDEIGAVIDFKRPVKKPDCDGNVMLEIQGLARGSTVPNHDGEHLKENLKCKDGEQNGGQADPKVVVVFPVQDVDQCLKSRESKLSGIEAEEADESTSTTADASSESAAGISDNDTKVGFDLNEGFDVDDGKCGDPSSSTASDCLANVRLISPVPFPISAVSSTIPSSITVAAAAKGPFVPPEDLLRSKGELGWKGSAATSAFRPAEPRKHLEALFGATSTSLSEPSVRKNSRPPLEFDLNIPDERILEDMNPRSFAAVSVSNNRENNSLRHEIGSKSVRCSGGFDLDLNQVNEFPDASNYATNNDRRIDTAFSVKSTGNPLRNHCIVEGSVRRDFDLNGPFMDEAGVELSHFSQLAKSNVPSQAPVSGLWVNNADLGNLSSWFPPGNTYANATIPSIMTDKEEHSFPVVSTCGSQRMLGPTSGVNPFGPEVYRGPVLSSTPAVPFPSAPFQYSVLSFANNFPLPSANYATDGSNSSSPEVSKKWGRQGLDLNAGPGCPDMEGKDETFAPRHLSIVGSQTQQEDRVRMYQPAGSVVKRKEPDGGWDGYKQSSWQ 1579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11615617 11621282 + Bpe005848.1 Bpe12g00585 112598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00585 1579 Pfam TFIIS helical bundle-like domain 377 426 IPR017923 -
Bpe12g00585 1579 Gene3D - 69 275 IPR043151 -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 574 614 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 214 260 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 1495 1579 - -
Bpe12g00585 1579 ProSiteProfiles BAH domain profile. 73 188 IPR001025 GO:0003682
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 1117 1137 - -
Bpe12g00585 1579 SMART BAH_4 73 188 IPR001025 GO:0003682
Bpe12g00585 1579 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 69 1496 - -
Bpe12g00585 1579 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1496 1579 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 495 614 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 844 881 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 432 470 - -
Bpe12g00585 1579 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 366 440 IPR035441 -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 1538 1552 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 1110 1141 - -
Bpe12g00585 1579 CDD TFIIS_I 363 427 - -
Bpe12g00585 1579 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1496 1579 - -
Bpe12g00585 1579 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 69 1496 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 240 260 - -
Bpe12g00585 1579 ProSiteProfiles TFIIS N-terminal domain profile. 343 429 IPR017923 -
Bpe12g00585 1579 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 297 430 IPR035441 -
Bpe12g00585 1579 SMART TFS2_5 349 428 IPR003617 GO:0005634
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 498 560 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 430 470 - -
Bpe12g00585 1579 Pfam BAH domain 75 182 IPR001025 GO:0003682
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 898 927 - -
Bpe12g00585 1579 MobiDBLite consensus disorder prediction 219 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00585 - - - bhj:120071278 1626.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00824 Bpe12g00585 CCT
Bpe07g00824 Bpe12g00585 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00585 Bpe-Chr12:11615617 Bpe14g00208 Bpe-Chr14:2330939 3.11E-64 wgd
Bpe12g00585 Bpe-Chr12:11615617 Bpe07g00824 Bpe-Chr7:14505163 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22220 PF01426 BAH 1.10E-08 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00585 Bpe_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0