Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00593 ATTTTTGTCGACGGAAAATGTTCTTGCAGGTACGATGGGTTCTTCTTGTCGATGCTCGCGACTAGCGTAATAATTGTTGCCATAAACTGGAGGGGGTACCATACTTGTTTACACCCACTGCACATATGGATCGTGGTTGATTATACTGCTGTTTTTATTTTCCGTCTATTGATGTTTGTAGATAATGGTCTTGCAGCTGGAATGGGTTTGGATTTTGGATGGCAGCAGAGATATGCTCGTTTTTGCGGAAGATTAGTGGTACTGTCGATTCTCTCTTTGCTTCTCTATCCATTTCTTTGGACTTGGACCATAATTGGTACCTTGTGGTTCAGAGAAGCTAAAAATTGTTTGCCTGAAGAAGGTCAGAAATGGGGCTTTCTTATTTGGTTGCTTTTTAGCTACTGTGCGCTCCTCTCTATTGCTTGCATGTCATTGGGAAAGTGGTTGACTCGTAGACAAGCACACTTATTACGTGCTCAGCAAGGGATACCGGTGTCAGAGTATGGGGTTTTAGTTGACATGATACGAGTACCAGAATGGGCATTTGAAGCTGCAGGACAAGAATTGAGAGGCATGGGCCAAGATGCTGGTGCATATCATCCTGGACTGTACTTGACTCCTGCTCAGAGGGAAGCTGTTGAAGCACTCATTCAGGAACTTCCAAAGTTCAGGTTGAAAGCTGTTCCAACGGATTGTAGCGAATGCCCCATTTGTCTTGAAGAGTTTCATGTACGTGGACTGCCTTGTGCTCATAATTTTCACGTAGAATGTATCGACGAGTGGCTTCGACTGAACGTGAAATGTCCTCGATGCCGCTGCTCTGTCTTCCCAAATCTCGATCTCAGTGCTCTATCCAGTCTTCCAGCTGATACAGAACGGTCATCCGCCACTGTCGTTACAGCAAACCGCTATATGAGAGCCCAACCTTCAAGCCAGAGCTATCTCTTAAGGTTGCAGGGTCTGCTTCGCCAAGTGCGTACAGAAAATGCCGAGGCAAGCCCCGAAGCAGCTAACTCCTTCGAAGCTGTCGAGAATGGTCGTAGTTCTATGGCTACTCAGCTTTCATCGAGCACAGAATCGCCCTCCGCCGGACGCACTCTTGCTAGTCAGTCCACCTCATCACAACTGTAA 1131 46.6 IFVDGKCSCRYDGFFLSMLATSVIIVAINWRGYHTCLHPLHIWIVVDYTAVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRLVVLSILSLLLYPFLWTWTIIGTLWFREAKNCLPEEGQKWGFLIWLLFSYCALLSIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPEWAFEAAGQELRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLPADTERSSATVVTANRYMRAQPSSQSYLLRLQGLLRQVRTENAEASPEAANSFEAVENGRSSMATQLSSSTESPSAGRTLASQSTSSQL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11677914 11681692 + Bpe005856.1 Bpe12g00593 112606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00593 376 Pfam Ring finger domain 234 272 IPR001841 -
Bpe12g00593 376 SMART ring_2 235 271 IPR001841 -
Bpe12g00593 376 MobiDBLite consensus disorder prediction 342 376 - -
Bpe12g00593 376 MobiDBLite consensus disorder prediction 329 376 - -
Bpe12g00593 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 277 IPR013083 -
Bpe12g00593 376 SUPERFAMILY RING/U-box 217 280 - -
Bpe12g00593 376 ProSiteProfiles Zinc finger RING-type profile. 235 272 IPR001841 -
Bpe12g00593 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 9 357 IPR044793 GO:0004842|GO:0010182
Bpe12g00593 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 9 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00593 Bpe-Chr12:11677914 Bpe02g00937 Bpe-Chr2:8223380 1.17E-10 dispersed
Bpe12g00593 Bpe-Chr12:11677914 Bpe04g00798 Bpe-Chr4:5240047 1.99E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00593 K16284 - zju:107418388 587.03