Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00595 GTTCCTGGGGACGTTGTTCTCGATCTCTCAACTATGACTAAACAGACCATCAAGCTTGGAGGCGGTCTTCGTCAGGACTGCGATGCAATTTCTGTCACGAAGGCTGGAAACTTTAGATTCTCCAAGCCAAGCAAATATTGGGTTGAAAGTTCTCAAAAGAGGTATGTACCTGTGGCAGAGGATTCTGTTCTCGGAATCGTGGTAGATACTAAAGCTGATAACTTTCTGGTGGACATAAAAGGGCCAGCACTAGCTTTTTTACCTGTGCTTGCATTTGAAGGAGGAACAAGGCGTAACATTCCAAAGTTTGAGGTGGGGACATTACTTTATGTTCGAGTTGTCAAAGCAAATTATGTTATGAACCCCGAATTGGCATGCACTGATGCCAACGGAAAGGCTGCGGAATTCGGTCCCCTTAAAGATGGATACATGTTCGAGTGTTCCATTGGATTATCACGATCGTTACTAAGCTCGCCAACATGTCCCGTTCTTGACGCACTAGGGAAGAAGTTATCTTTCGAGATTGCAGTTGGTTTGAACGGCCGTGTTTGGGTTAATTCTTCGTCTCCTTCCACAGTCATCATCATTGCTAATGCAATCATGAACTCAGAATCTTTGAGCAATGTCCAGCAGAGAATAATGGTGGATAAACTGCTGAAAAATTTAAAGCTATCAAGTTGA 681 43.61 VPGDVVLDLSTMTKQTIKLGGGLRQDCDAISVTKAGNFRFSKPSKYWVESSQKRYVPVAEDSVLGIVVDTKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEVGTLLYVRVVKANYVMNPELACTDANGKAAEFGPLKDGYMFECSIGLSRSLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVNSSSPSTVIIIANAIMNSESLSNVQQRIMVDKLLKNLKLSS 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11687038 11691430 + Bpe005858.1 Bpe12g00595 112608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00595 226 CDD S1_Rrp40 54 139 IPR037319 GO:0003723
Bpe12g00595 226 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 223 IPR036612 GO:0003723
Bpe12g00595 226 PANTHER PNAS-3 RELATED 1 220 IPR026699 GO:0000178|GO:0003723
Bpe12g00595 226 SUPERFAMILY Ribosomal L27 protein-like 1 53 - -
Bpe12g00595 226 Gene3D - 61 137 IPR012340 -
Bpe12g00595 226 Gene3D K Homology domain, type 1 138 221 IPR036612 GO:0003723
Bpe12g00595 226 SUPERFAMILY Nucleic acid-binding proteins 53 145 IPR012340 -
Bpe12g00595 226 Gene3D - 1 56 - -
Bpe12g00595 226 Pfam KH domain 142 190 IPR004088 GO:0003723
Bpe12g00595 226 PANTHER EXOSOME COMPLEX COMPONENT RRP40 1 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00595 K03681 RRP40, EXOSC3; exosome complex component RRP40 - qsu:112034658 387.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g754 . . . . Bpe12g00595 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014281 1 1 1 1 1 0 2 0 0 0 0 0 0 1 1 0 0 2 1 0 1 1 1 1 1 0 1 2 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00595 Bpe_Chr12 FPKM 2.229774 3.094725 9.211397 9.536875 2.530209 0.47679 5.247158 7.43802 9.179722 13.433673