Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00621 ATGGAAATAGAAGCGGGGAAGCCGTCGGGAAATGGGCTCGTGGTCGGGGGGTTGAGCCCGTTAAGCGAGACGCTATGGAGGGATAGGACGAATGCCGAGATCGTCGGGGATGTTTCGGCGAGGCTCACATGGAAAGACCTGACTGTCATGGTTACTCTGAGAAATGGAGAAACTCAGAAGGTTTTGGAGGGATTAACTGGCTATGCCGAGCCAGGCACCATCACTGCTCTAATGGGTCCTTCTGGTTCCGGCAAGTCGACCTTGCTCGACGCTCTTTCCAGTCGCCTAGCCGCCAACGCTTTTCTCTCCGGCACCATTCTCCTCAACGGCCGGAAAACCAAGCTCTCCTTCGGCGCCGCCGCCTACGTGACTCAAGATGATACCCTGATCGGAACTCTAACAGTAAGGGAAACGATAATGTACTCAGCACGTCTTCGACTGCCCGATAAGATGCCATGGACGGAGAAGCGAGTTCTTGTCGAGAGTACCATTGTCGAGATGGGTCTTCAGGATTGCGCCGATACAGTGATCGGAAACTGGCATCTGAGAGGAATCAGTGGGGGCGAGAAGAGAAGAGTCAGCATTGCTCTAGAAATTCTTATGAGGCCGAGATTGCTCTTTCTCGATGAGCCGACAAGCGGACTCGACAGCGCTTCAGCTTTCTTCGTAACTCAAACCCTACGTGGGTTATCAAGAGATGGAAGAACTGTGATTGCTTCCATCCACCAACCCAGCAGTGAAGTGTTTGAATTATTTGATCAACTTTATTTGCTCTCCGGCGGAAAGACAGTCTATTTTGGCCGGGCTTCCGACGCATACGAGGATTGGATACACATTTTGATCATTAATCTCATCTACTCCCATTTTCAGTTCTTCGCTCAAGTTGGATTTCCATGTCCGACCATGAGGAACCCCTCCGACCATTTTCTCCGATGCGTCAATTCCGACTTCGATAAAGTCAAAGCCACTCTGACAGGCTCCATGAAGCTCAAGTTTCTACCAAGTGATGATCCTTTGGAGAAAATGACAACAGTAGAAGCCATTAGGACCCTCATCAGTTCCTACTCTTCATCTCAATATCACTACATAGCACAGCAAAAGGTTGAAGAAATATCCAAAGTTAAAGGAACTGTGCTGGATTCAGGAGGCAGCCAAGCTAGTTTCTTGATGCAGGTTCTCACGTTGACTAAGCGATCGTTTGTTAACATGTCGAGGGATTTTGGATACTACTGGCTTCGGCTCGTGATCTATCTAGTCGTCACAATGTGCATCGGAACGATCTACTTCAATGTTGGGACAGGATTCAACTCCATATTGGCAAGGGGATCTTGTGTGTCTTTTGTGTTTGGTTTCGTGACGTTCATGTCGATCGGTGGATTTCCGTCGTTTGTGGAGGACATGAAAGTGTTCCAAAGGGAAAGATTGAACGGACACTATGGAGTGAGTTCTTTTGTCATAAGCAACACCATCTCGGCCACACCGTTCCTCGTCCTCATCACGTTTCTCTCCGGGACCATTTGTTATTTCATGGTTCGTCTACACCCTGGTTTCTGGCATTACATATTCTTCGTGCTATGCCTTTATGCAAGTGTCACAGTCGTCGAGAGCTTGATGATGGCCATCGCTAGCATCGTCCCGAACTTCCTCATGGGCATCATCATAGGAGCTGGAATTCAGGGTATTTTCATGCTGGTCTCTGGCTACTTCCGGCTCCCCCACGACATCCCGAAGCCTGTGTGGCGCTATCCGATGTCATATATTAGCTTCCACTTCTGGGCCATTCAGGGGGTTTTGAAAGGGTTTGACCAAGCTACAAACATTGACGAATCTCATGAACCAGTCTACTCAACGAAGGAAGGGGTTCAGCAACTTGTGTTGGGACTGGACATAGTAAGGGGTGACAACATAAGCATTGTCGGGGAGGTTGATGAAGGGCTTGATTCTAGCCTTGACTTGTCAAAATTAAGGGAAACCAATATAATAATTCATGGTCTAGTAATCCACCACTGCAAGTCTCAAGCTGCAACCCAAGTTATGGGAACTAATGGGAAGATAGTGGGAATGGGCAACGTCGATGGTGATGCCATTCGACTCGTGTCAGCATCAAAGGTGTGGATCGACCACAACACACTCTACCAATGCGAGGACGGCCTCTTGGACGTAACGAGAGGGTCGACAGACATCACAATCTCGAACAACTGGTTTAGGGATCAGGACAAAGTCATGCTTTTGGGACACGATGATGGGTTTGTTAGAGACAGGGACATGAAAGTCACTCTTGTTTTCAACCATTTCGGACCGAATTGCAACCAACGAATGCCCCGGATTCGGCATGGCTATGCACATGTTGCGAACAACTTGTACCAGGGATGGACTCAATACGCCATTGGCGGTAGTATGAATCCGAGAGTTAAGAGTGAGGCCAACCTATTCATAGCGCCTAAATCAGGAAGCAAGGAGTTGATATGGACAACTGGAGGGCTGGGAGGGAAGAGCTCGTGGAAGTTTTTCTCAGTAGGAGATGTTCTTGAAAATGGAGCTACTTTCAGTGAAGCAGGCACACAGCTGAGCCTGAGGACAATAGCTGCAAAGCCAGGCTACAGCGCCCAACAATGGTTCAAAGTAGCAGATGCTAAGTATCTAAGACAATTGACAAGTTCTTCAGGAGCTCTAAAATGCAGCAGAAATTCAAGATGTTGA 2700 48.26 MEIEAGKPSGNGLVVGGLSPLSETLWRDRTNAEIVGDVSARLTWKDLTVMVTLRNGETQKVLEGLTGYAEPGTITALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKTKLSFGAAAYVTQDDTLIGTLTVRETIMYSARLRLPDKMPWTEKRVLVESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGRASDAYEDWIHILIINLIYSHFQFFAQVGFPCPTMRNPSDHFLRCVNSDFDKVKATLTGSMKLKFLPSDDPLEKMTTVEAIRTLISSYSSSQYHYIAQQKVEEISKVKGTVLDSGGSQASFLMQVLTLTKRSFVNMSRDFGYYWLRLVIYLVVTMCIGTIYFNVGTGFNSILARGSCVSFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVSSFVISNTISATPFLVLITFLSGTICYFMVRLHPGFWHYIFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWAIQGVLKGFDQATNIDESHEPVYSTKEGVQQLVLGLDIVRGDNISIVGEVDEGLDSSLDLSKLRETNIIIHGLVIHHCKSQAATQVMGTNGKIVGMGNVDGDAIRLVSASKVWIDHNTLYQCEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGFVRDRDMKVTLVFNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPRVKSEANLFIAPKSGSKELIWTTGGLGGKSSWKFFSVGDVLENGATFSEAGTQLSLRTIAAKPGYSAQQWFKVADAKYLRQLTSSSGALKCSRNSRC 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11882917 11895033 - Bpe005882.2 Bpe12g00621 112634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00621 899 SMART amb_all 619 817 IPR002022 -
Bpe12g00621 899 SUPERFAMILY Pectin lyase-like 630 895 IPR011050 -
Bpe12g00621 899 Gene3D - 601 892 IPR012334 -
Bpe12g00621 899 SMART AAA_5 71 261 IPR003593 -
Bpe12g00621 899 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 598 - -
Bpe12g00621 899 SUPERFAMILY Sm-like ribonucleoproteins 593 647 IPR010920 -
Bpe12g00621 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 276 IPR027417 -
Bpe12g00621 899 CDD ABCG_EPDR 39 267 - -
Bpe12g00621 899 CDD LSm8 594 656 IPR034103 GO:0000398|GO:0005688|GO:0046540
Bpe12g00621 899 PRINTS Pollen allergen Amb family signature 692 713 IPR018082 -
Bpe12g00621 899 PRINTS Pollen allergen Amb family signature 834 858 IPR018082 -
Bpe12g00621 899 PRINTS Pollen allergen Amb family signature 794 813 IPR018082 -
Bpe12g00621 899 PRINTS Pollen allergen Amb family signature 772 791 IPR018082 -
Bpe12g00621 899 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 285 IPR003439 GO:0005524
Bpe12g00621 899 PANTHER OS04G0528300 PROTEIN 11 598 - -
Bpe12g00621 899 Pfam Pectate lyase 657 811 IPR002022 -
Bpe12g00621 899 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524
Bpe12g00621 899 Pfam ABC-2 type transporter 391 600 IPR013525 GO:0016020|GO:0140359
Bpe12g00621 899 Pfam ABC transporter 64 213 IPR003439 GO:0005524
Bpe12g00621 899 Gene3D - 35 279 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g01055 Bpe12g00621 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00282 Bpe-Chr8:1682734 Bpe12g00621 Bpe-Chr12:11882917 0 dispersed
Bpe11g00821 Bpe-Chr11:6123562 Bpe12g00621 Bpe-Chr12:11882917 1.19E-115 dispersed
Bpe11g00916 Bpe-Chr11:6793053 Bpe12g00621 Bpe-Chr12:11882917 0 dispersed
Bpe12g00621 Bpe-Chr12:11882917 Bpe15g00010 Bpe-Chr15:1540043 0 dispersed
Bpe07g01057 Bpe-Chr7:16043254 Bpe12g00621 Bpe-Chr12:11882917 0 transposed
Bpe12g00621 Bpe-Chr12:11882917 Bpe07g01055 Bpe-Chr7:16035269 2.80E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00621 K05681 - rcu:8286479 1038.1