Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00626 ATGGCGGATGGCTGCTCCGTAGGTGTTCCCGATTTACTCCCTCTTGCCACTTCCACATTTACTCAACTACAGAGAAGAAAAGTTTTCCTTGGCATTTACTCCGCTAGATGTTTCTGTAATCCTCGTCTTCAGTTGAAGAGGAAGCAGATTCGAGTTAGCTCAGGTTCTCTGATCCGGTCGGAACCTTCGATTTCGATTTCGATTTCGACTTCGTTGTCTCTGTCTCTTCCCAATCAGCCCAATTCCTCATGCAGTTCTGAGCGAACGGATGATGGTTTCGTGGTCGTCAATTTCTATCACTTTGTGTGCATTAAAGAGCCAGAAGCTGAGGTCGCCAGGCACCTCTCCTTTCTGGAGGCTCTCGACATTCGTGGCCGAATATATTTGAACTCTCAAGGCATAAATGCACAGTACAGTGGACCATCAAAGGATGCTTTTGCATATGTTCACTGGTTGAGAGGAGATGACAGGTTTTCTGATATTCGAGTTCAAACTTCACAAGCACTGAATGGTCATGCCTTTCCAAAATTGAAGTTGCGTTACAAGCCATCACTAGTGCAGATGGAAGGAGGTTCTTCACATCTTCCTTTGCTTGACCCTTCAATGCGTGCAACATTGCTAGCACCTTCGGAATGGAGAAAAAGATTGGAAGCCAATAGGAACAACAATTCATCACATGACAATTGTATTCTGCTGGATGTGAGGAATGGTTACGAGTGGGATATTGGTCACTTTCGTGGGGCTCAACGTCCTGATGTGGATTGCTTTAGAAGCACTTCATTTGGCCTATCCCAAATTGAGGTCGCTGCCTCCGATCCGTTAGCAAACATTAGCAAAGAAAAAACAGATATATTAATGTACTGTACCGGAGGCATACGATGTGATGTGTATTCAACAATTTTAAGAGAGAGGGGCTTTCAAAATTTATACACATTGGAAGGAGGAGTTTCTAATTATTTGAAAAATGAAGGTTCATGGGAATGGGTTGGCAATTTGTTTGTGTTTGATTCACGCCTCTCTCTACCGCCACCTTCCATCAAGTCTACGGCCGAGGCTGAAGCTCATAAAACTCCCCAAGATTTGGCGACTACTGGGTTTGCTAGATGCTATATATGTGCTTCTCAGGTCAGCGAGTTAAGACACCGGAATTGTGCGAATCTCGACTGCAATCTCCTCTTTCTGTGCTGTAAAAACTGCCTTCTGGATTTGAAAGGATGTTGCTGTTCGAATTGCATTACTGCCCCACGGCTCCGACCTGTTTTAACAGGAAACCAGAGGTACCAAAAATGGCATATTTACCGAGACTTGGAACCTAAATCAACTTGA 1326 44.34 MADGCSVGVPDLLPLATSTFTQLQRRKVFLGIYSARCFCNPRLQLKRKQIRVSSGSLIRSEPSISISISTSLSLSLPNQPNSSCSSERTDDGFVVVNFYHFVCIKEPEAEVARHLSFLEALDIRGRIYLNSQGINAQYSGPSKDAFAYVHWLRGDDRFSDIRVQTSQALNGHAFPKLKLRYKPSLVQMEGGSSHLPLLDPSMRATLLAPSEWRKRLEANRNNNSSHDNCILLDVRNGYEWDIGHFRGAQRPDVDCFRSTSFGLSQIEVAASDPLANISKEKTDILMYCTGGIRCDVYSTILRERGFQNLYTLEGGVSNYLKNEGSWEWVGNLFVFDSRLSLPPPSIKSTAEAEAHKTPQDLATTGFARCYICASQVSELRHRNCANLDCNLLFLCCKNCLLDLKGCCCSNCITAPRLRPVLTGNQRYQKWHIYRDLEPKST 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11912430 11917271 + Bpe005886.1 Bpe12g00626 112639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00626 441 Gene3D - 199 358 IPR036873 -
Bpe12g00626 441 Gene3D - 81 186 - -
Bpe12g00626 441 Pfam UPF0176 acylphosphatase like domain 94 183 IPR040503 -
Bpe12g00626 441 Pfam Rhodanase C-terminal 330 411 IPR022111 -
Bpe12g00626 441 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 88 435 IPR020936 -
Bpe12g00626 441 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 205 339 IPR036873 -
Bpe12g00626 441 CDD RHOD_YceA 204 321 - -
Bpe12g00626 441 ProSiteProfiles Rhodanese domain profile. 225 328 IPR001763 -
Bpe12g00626 441 Pfam Rhodanese-like domain 217 320 IPR001763 -
Bpe12g00626 441 SMART rhod_4 208 325 IPR001763 -
Bpe12g00626 441 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 88 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00626 - - - qsu:111994584 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01938 Bpe-Chr4:24268435 Bpe12g00626 Bpe-Chr12:11912430 7.00E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g979 . . . . Bpe12g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00555 . 36 309 Sulfurtransferasese/Rhodanese AT5G23060 62.6 1.9e-87 319.3
Bpe13g00981 . 444 816 Sulfurtransferasese/Rhodanese AT4G01050 59.0 5.0e-117 418.3
Bpe02g01838 . 6 615 Sulfurtransferasese/Rhodanese AT1G09280 63.6 2.3e-222 768.5
Bpe04g01938 . 100 474 Sulfurtransferasese/Rhodanese AT2G40760 70.8 1.1e-150 530.0
Bpe12g00626 . 81 441 Sulfurtransferasese/Rhodanese AT1G17850 64.5 2.7e-138 488.8
Bpe04g00562 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 75.0 9.8e-84 306.6
Bpe04g01274 . 22 221 Sulfurtransferasese/Rhodanese AT3G08920 56.7 2.7e-64 241.9
Bpe07g00865 CCT,ECH 122 332 Sulfurtransferasese/Rhodanese AT4G24750 64.5 5.0e-77 284.6
Bpe08g00293 . 17 295 Sulfurtransferasese/Rhodanese AT5G19370 56.5 6.9e-82 300.8
Bpe09g00160 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.3 2.8e-154 541.6
Bpe07g01026 . 37 251 Sulfurtransferasese/Rhodanese AT4G27700 68.8 3.5e-78 288.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014038 0 2 1 0 1 0 0 0 0 1 0 0 1 1 1 1 0 1 1 0 1 1 1 1 2 0 1 1 4 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00626 Bpe_Chr12 FPKM 68.647018 70.343636 35.57225 35.630783 22.526506 21.382544 21.462765 15.745367 14.710587 16.185295