Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00630 GAAATGGATGGACTGAGACCGGTATGGGCGGTGAAGGTGATAGTGTTGATAATAATCACATCGATTTTCTTCCGTTGCGTCTGGGCAACAAACCACTCAGTAGGTGGAGATTCAGGCTGGGATCTTAGTTCTAACCTTCAAGCCTGGTCTTCGAGGACCACCTTTCATATAGGCGACTTCCTAGCAGTGTTTAGGTACTTGCCACTACACGACGTACTAGAGGTGAACCAGATTGACTACATCATGTGCCGTACAACGAACCCGATCAAAGCTTACACCGACGGGGAGTCGGTAATCCGTCTGCATGAACCTGGTATGAGATACTTCATATGCGGTCGTCTTCGACACTGTTTTATGGGGCTGAAGCTTCAAGTTCGGATCCTCGAGAGCGATATTAAAAATAATTCAACGGTCGGCGGTGGTGACCAAGAGCAAGACCGTGGCGGTAGCAATCAAACGCATTCTCCTCCGCCTTCTGATTATACTCCTCCTAGCACTGGTACGCCGGCTGAGCCACCGCCAGCTCCTGATATTTCTGGGGAACCTCCTCATCCTTGTTGCTCTGGGGTTGGCGACCTTATTGTGACTGGTAATGTGACCAAATGGTGGTGGGTGATTTCTATTACGGTAGTAATCCTTTGGGTCTCTGCTTGA 654 49.39 EMDGLRPVWAVKVIVLIIITSIFFRCVWATNHSVGGDSGWDLSSNLQAWSSRTTFHIGDFLAVFRYLPLHDVLEVNQIDYIMCRTTNPIKAYTDGESVIRLHEPGMRYFICGRLRHCFMGLKLQVRILESDIKNNSTVGGGDQEQDRGGSNQTHSPPPSDYTPPSTGTPAEPPPAPDISGEPPHPCCSGVGDLIVTGNVTKWWWVISITVVILWVSA 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11952975 11954272 + Bpe005890.1 Bpe12g00630 112643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00630 217 MobiDBLite consensus disorder prediction 134 156 - -
Bpe12g00630 217 Gene3D - 28 132 IPR008972 -
Bpe12g00630 217 CDD Phytocyanin 30 127 - -
Bpe12g00630 217 MobiDBLite consensus disorder prediction 134 183 - -
Bpe12g00630 217 MobiDBLite consensus disorder prediction 157 181 - -
Bpe12g00630 217 SUPERFAMILY Cupredoxins 28 127 IPR008972 -
Bpe12g00630 217 ProSiteProfiles Phytocyanin domain profile. 30 129 IPR003245 GO:0009055
Bpe12g00630 217 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 31 135 - -
Bpe12g00630 217 Pfam Plastocyanin-like domain 43 120 IPR003245 GO:0009055
Bpe12g00630 217 PANTHER BLUE COPPER PROTEIN 31 135 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00630 - - - bhj:120084209 212.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01066 Bpe12g00630 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00630 Bpe-Chr12:11952975 Bpe14g00466 Bpe-Chr14:4192829 9.75E-20 dispersed
Bpe07g00593 Bpe-Chr7:12490072 Bpe12g00630 Bpe-Chr12:11952975 3.48E-32 transposed
Bpe12g00630 Bpe-Chr12:11952975 Bpe07g01066 Bpe-Chr7:16080707 2.73E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g973 . . . . Bpe12g00630 . . Bma12g01259 . . . . . . . Cpe20g00050 . . . . . . . . . . . . . . . . . . . Lsi02g00032 Csa01g00508 Chy12g01576 Cme12g02034 . . . . Bpe07g01066 . . . . . . Cma13g01102 . Car13g00936 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011830 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00630 Bpe_Chr12 FPKM 12.360042 12.609564 16.201147 17.401859 3.375335 3.372352 4.204754 33.443104 34.830627 36.575886