Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00632 ATGTCTTTGACCCGCCGTAGCTCACCCGGAGTTGGCCAGCAGCTTTTCTTCTGCTACGAGTGTAACCAAACGGTTTCTATTTCCCAATCCTCCTCCTCCTCAGATCTCCTCTGCCCCAATTGCAACGGTGGCTTTATCGAAGAATTGGAAAACCCTGACCCTATTCCTTTCCCTTTCTCTTTTAACACCGATTCCTTCCCGGATTTTGACTCCGGTGGCCGTAGTTCTGATGATTTTCCTTTAGTCTTCTCTACTACTGCCTCCTACGGCGGCGATGGCACGGTTATAAACGATCTTTCTGAGCTCTTTGGTGCTGGTCCTATTCCTACTCGTTTGCAGGACCCCGACGGCTTCAACCCTTTGCTATTTCTTCAGAACTATCTTCAAAATGCTCATGTTCAATTAGTGTTCCAGAATGTCTCAGGGGAGGCTATTAATCCTCATGCGAATCTAAATCTTGGAGACTACTTCTTTGGCCCTGGCCTTGAGCAACTAATTCAGCAACTGGCTGACAACGATCCCAATAGGTACGGGACACCTCCAGCATCAAAATTAGCTGTGGAGGCGCTTCCTGATGTTATTATTTCAAAAGAAATATTGACGTCAGATTCATCACAGTGCGCTGTTTGTACGGATACGTTTGAGCTTGGCGAGCAGGGGAAACAGATGCCCTGCAAACATATATACCATTCGAATTGTATCCTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTGTGTCGATATGAATTACCCACGGATGATCCTGATTACGAGCAAAGGATCCATGGGAATTCTAGTCCTGGTGCGGAAAGTCGAAATCGAAATAGCACTATCAGTGGGAGTACTGCTGGTGGAGCTTTAGGAAGTGAGGCAGCTTTGGGAGATAATTCTGGGTCACAACCTCAACTCGGAGATGATCCTATGTTTAGGAGAATTTCTTTACCTTGGCCGTTTAGAGTATTTGACTCTCCTGCGGAGACTAGTAATAGCGAGACTGGAGACAATAATGAACCAAATTCGGCCAACGGGAAAAATCAAAACACTCCATCAGAGTCTGGGCAGGAACACCGCGATTGA 1080 46.48 MSLTRRSSPGVGQQLFFCYECNQTVSISQSSSSSDLLCPNCNGGFIEELENPDPIPFPFSFNTDSFPDFDSGGRSSDDFPLVFSTTASYGGDGTVINDLSELFGAGPIPTRLQDPDGFNPLLFLQNYLQNAHVQLVFQNVSGEAINPHANLNLGDYFFGPGLEQLIQQLADNDPNRYGTPPASKLAVEALPDVIISKEILTSDSSQCAVCTDTFELGEQGKQMPCKHIYHSNCILPWLELHNSCPVCRYELPTDDPDYEQRIHGNSSPGAESRNRNSTISGSTAGGALGSEAALGDNSGSQPQLGDDPMFRRISLPWPFRVFDSPAETSNSETGDNNEPNSANGKNQNTPSESGQEHRD 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11960303 11961382 + Bpe005892.1 Bpe12g00632 112645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00632 359 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Bpe12g00632 359 SMART ring_2 207 247 IPR001841 -
Bpe12g00632 359 CDD RING-H2_RNF126_like 206 248 - -
Bpe12g00632 359 Pfam zinc-ribbon 14 49 IPR039525 GO:0061630
Bpe12g00632 359 MobiDBLite consensus disorder prediction 258 359 - -
Bpe12g00632 359 MobiDBLite consensus disorder prediction 324 351 - -
Bpe12g00632 359 Pfam Ring finger domain 206 248 IPR001841 -
Bpe12g00632 359 MobiDBLite consensus disorder prediction 265 285 - -
Bpe12g00632 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 254 IPR013083 -
Bpe12g00632 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 287 - -
Bpe12g00632 359 SUPERFAMILY RING/U-box 189 255 - -
Bpe12g00632 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 10 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00632 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 405.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01067 Bpe12g00632 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00362 Bpe-Chr1:2276471 Bpe12g00632 Bpe-Chr12:11960303 5.83E-47 dispersed
Bpe02g01571 Bpe-Chr2:18689632 Bpe12g00632 Bpe-Chr12:11960303 1.35E-23 dispersed
Bpe04g01315 Bpe-Chr4:19612330 Bpe12g00632 Bpe-Chr12:11960303 4.50E-32 dispersed
Bpe07g01067 Bpe-Chr7:16085681 Bpe12g00632 Bpe-Chr12:11960303 0 dispersed
Bpe12g00229 Bpe-Chr12:1934786 Bpe12g00632 Bpe-Chr12:11960303 6.11E-11 dispersed
Bpe12g00632 Bpe-Chr12:11960303 Bpe15g01277 Bpe-Chr15:21162205 1.17E-41 dispersed
Bpe12g00631 Bpe-Chr12:11956125 Bpe12g00632 Bpe-Chr12:11960303 1.53E-128 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00632 Bpe_Chr12 FPKM 5.654439 5.100626 2.912576 2.549078 9.990621 8.778531 11.883005 3.561334 3.344275 4.037085