Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00639 ATGGAGTACGGCGGTGGAGGCGCTGGCTCCGGCGGAGAAAACGATTCGTTGTCCGACCAACAGAAGAGGAGGAAACGCTACCATCGTCACACTGCTCATCAGATTCAGAAGCTCGAAGCAGTGTTCACTGAGAGTCCTCACCCAGATGAAAAACAGAGATTGCAGCTGAGCAGAGAACTGGGTCTGGCTCCTCGTCAAATCAAATTCTGGTTCCAGAACAGAAGAACCCAGATGAAGGCCCAACACGAGAGAGCAGACAACTGTGCTCTTCGCGCAGAGAACGACAAGATCAGATGTGAAAACATTGCAATCAGAGAAGCGCTCAAAAATGTGATTTGTCCATCTTGTGGTGGACCTCCCAATACCGAAGATTCCTATTTCGACGAGCAGAGACTTGGCATGGAAAATTCCCAATTGAAACAAGAGCTCGACAGAGTTTCCAGTATTGCAGCCAAGTACATGGGCAGGCCAATTTCCCAGCTTCCTTCTGTTCATCCTGTTCCCATTTCATCTCTCGAGCTATCAATGGGTAATTTTGGAGTTCCTCCCAATTCTCTGGATCTTGATCTTCTTCCAGGAATCCCACCCACAGGCCAATCTTTACCATTTCAATCGATGGGTTTATCAGAAATGGACAAGTCCCAAATGACTGATGTGGCTGCAAATTCAATGGAAGAACTAATCAGGCTTCTGCAATCAGATGAGCCATTGTGGATGAAATCCACCACAAATGGCAAAGACATTCTTAATCTTGAGAATTACAGACGGTTTTTTCGCAAGCCGAATGCTCATTTGAAAAATCCCCGTCTTCGAATCGAAGCGTCTAGAGATTCTGGTGTTGTCGTGATGAATGCTTTGACATTGATTGACATGCTTATCGACCCTAGCAAGTTGATGGAGCTATTTTCAAGCATTATTTCGTCTGCAAGAACGATTGAAGTGATATCGACTGGAATGTTGGGTAGCCATAGTGGAACTTTACTTCTGATCCATCAAGAATTACAGGTGCTTTCTCCATTAGTGCCAACTCGAAAATTCTACTGCCTGAAATATTGCCGGCAAATCGAGCAGGGGCTGTGGGCGATATGCGACGTTTCGTACGAACCCACGGGAGAAAACCAATTCGCTTCTTCGCAGTTTTGGTCTCATCGGCTTCCATCCGGCTGCCTCATTCAAGACATGCCTAATGGTTATTCTAAGGTTATTTGGGTTGAGCATGTGGAGATTGAAGATGAAGCCCCTCCTCATCGGCTCTTTCGAGACCTATTTTATAGTGGCTCAGCATTTGGTGCCGAAAGATGGGTTGCCACTCTTCAAAGAATGTGCGAAAGATATGCTTCTCTGATGGTCCCTGCCAATTCAGCCCGGGATCTCAAAGGAGGAGTAATTCCTTCGCCGGAGGGGAAGAGGAGCCTGATGAAACTAGCCCAGCGAATGGTCAACATCTTTTATGCGAGTATCGGTACGTCGTACGGTCATCGATGGACGACGCTTTCAGGAAAAAATGAGGTTGTAGTTCAAGTCACCGTCCATAAAAGCACCGATCCTAGCCAACCAAATGGTGTGGTTCTTAGTGCAGCCACTACAGTTTGGCTGCCCATTTCGCCTGAAAACGTCTACAATTTTTTCAAAGACGATCGGACTCGATCCCAGTGGGATGTTCTTTCTGATGGCAATTTGATTCAAGAGATTGCTCATATATCAACCGGATCACATCCCGGAAACTGCATTTCCATTCTTCGAGCCCTCAACACCAGCCAAAACATGTTGATCCTCCAAGAAAGCTGCACAGATCCATCCGGGTCATTGGTTGTCTACTGTCCAGTCGATCTTCCGGCCATTAACATCGCGATGAGTGGAGAAGATCCTTCGTATATTCCATTACTGCCATCCGGGTTCGTCATTTTGCCTGACGGTCGAGCTGAACAAATGGAAACAGGTCCGTCGACAAGCTCCGGCCAATCACCCGGATCGTTAATTACAGTAGCATTTCAGATACTGATGAGCAGCCTGCCATCAGGTAAGCTTAACTTAGAGTCAGTGACAACTGTTAACAACCTTATTGGAACCACAGTCCAGCAAATTAAGACAGCCCTGAACTGTCCCAGTTCTTGA 2115 46.71 MEYGGGGAGSGGENDSLSDQQKRRKRYHRHTAHQIQKLEAVFTESPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPNTEDSYFDEQRLGMENSQLKQELDRVSSIAAKYMGRPISQLPSVHPVPISSLELSMGNFGVPPNSLDLDLLPGIPPTGQSLPFQSMGLSEMDKSQMTDVAANSMEELIRLLQSDEPLWMKSTTNGKDILNLENYRRFFRKPNAHLKNPRLRIEASRDSGVVVMNALTLIDMLIDPSKLMELFSSIISSARTIEVISTGMLGSHSGTLLLIHQELQVLSPLVPTRKFYCLKYCRQIEQGLWAICDVSYEPTGENQFASSQFWSHRLPSGCLIQDMPNGYSKVIWVEHVEIEDEAPPHRLFRDLFYSGSAFGAERWVATLQRMCERYASLMVPANSARDLKGGVIPSPEGKRSLMKLAQRMVNIFYASIGTSYGHRWTTLSGKNEVVVQVTVHKSTDPSQPNGVVLSAATTVWLPISPENVYNFFKDDRTRSQWDVLSDGNLIQEIAHISTGSHPGNCISILRALNTSQNMLILQESCTDPSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFVILPDGRAEQMETGPSTSSGQSPGSLITVAFQILMSSLPSGKLNLESVTTVNNLIGTTVQQIKTALNCPSS 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12017415 12020550 - Bpe005899.1 Bpe12g00639 112652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00639 704 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Bpe12g00639 704 SUPERFAMILY Bet v1-like 466 696 - -
Bpe12g00639 704 CDD START_ArGLABRA2_like 213 443 - -
Bpe12g00639 704 Gene3D - 216 422 IPR023393 -
Bpe12g00639 704 SUPERFAMILY Bet v1-like 210 446 - -
Bpe12g00639 704 SMART HOX_1 22 85 IPR001356 GO:0003677
Bpe12g00639 704 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 702 - -
Bpe12g00639 704 SMART START_1 218 444 IPR002913 GO:0008289
Bpe12g00639 704 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Bpe12g00639 704 Pfam Homeodomain 24 79 IPR001356 GO:0003677
Bpe12g00639 704 Pfam START domain 219 444 IPR002913 GO:0008289
Bpe12g00639 704 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 702 IPR042160 -
Bpe12g00639 704 MobiDBLite consensus disorder prediction 1 32 - -
Bpe12g00639 704 Gene3D - 11 95 - -
Bpe12g00639 704 ProSiteProfiles START domain profile. 209 447 IPR002913 GO:0008289
Bpe12g00639 704 CDD homeodomain 23 82 IPR001356 GO:0003677
Bpe12g00639 704 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01344 Bpe-Chr2:17076040 Bpe12g00639 Bpe-Chr12:12017415 3.20E-157 dispersed
Bpe12g00639 Bpe-Chr12:12017415 Bpe14g00705 Bpe-Chr14:5506370 0 dispersed
Bpe08g00808 Bpe-Chr8:10112023 Bpe12g00639 Bpe-Chr12:12017415 0 transposed
Bpe12g00639 Bpe-Chr12:12017415 Bpe07g01071 Bpe-Chr7:16117872 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22222 PF01852 START 1.50E-42 CL0209 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00639 K09338 - mnt:21407821 1057.74