Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00640 ATGGCTGGTGTTGATAAAGATGATATTCCAATGCTTTCAGACACAAACCCAGCACTGTATGTTGAACAAGTGAATTCTCAGTTCGGGTCATTTAATTCATTGGCACGGAATGCATCAGTTTTAGTTCCGATCGAAGGTAATCTCGTTAGCCATTCGGGCCCTCTCCGGAGTGAAAGAAAAGCTCCTTTTCCACAGATGAGTGGTCCTTTATTAATCATGCATAACCCTGTGGGAGGAGGATTTCAGTCGAATACGGGTAATTCAGAGCAATCAACAAAAGAACCAATGAAGGAAAATTTCCGTTCTTGGGAGGTAAACGGCGGGGCAGGTTGGTCCAATAGAAATGACGGCAGAAAAAATGAACATTTATTGAAGTTTCCATTGGGACAGTGTAATGATCCTTATTGTACGACATGCCCAACCTACAATATCAAAACTGCACAGCACAAGAGGTCAAGAGGCTCTGGCACTTTTGAACACAAGTTTCATAATGCTTTCTATGGGGATGCAAAAGGCTGGGCAAGGAAGTTTTGGTCTTTTCTTCATCCATATATTCCAGGAGTCATGAATCCTCATACGAAAATTATCCAAAAGTGGAACAAGTTTTTTGTTATTTCTTGTTTGGTGGCGATCTTTTTGGACCCGTTATTTTTCTTCCTACTCTCTGTCCAACAGGAGAATAAGTGCATAGTTTTAGATTGGCCCATGACTACAGCTCTGGTGGTTTTCCGAAGTGTAACTGATTTCATTTACCTTCTCCACATCCTTCTTCAGTTCAGGTTAGCCTATGTTGCTCCGGAGTCTAGAGTAGTTGGTGCAGGAGAGTTAGTGGATCATCCCAAGAAAATTGCTCTGAATTACCTTCGTGGTTTCTTTGTTGTTGACTTATTTGTAGCATTGCCTCTGCCTCAGATCATAATTTTGTTGATACTACCAAGATCCCTTGGAACATCTGGAGCAAACTACGCGAAAAATCTTTTACGTGCAGCAGTTCTCGTGCAATATATACCCAGATTGTTTAGATTTTTGCCACTTCTGGTTGGTCAGTCTACAAGTGGCTTTGTATTTGAGACAGCATGGGCCAATTTTGTCCTCAATCTTTTCACTTTTATGTTGTCTGGCCATGTTGTTGGCTCTTTCTGGTACCTCTTCGGATTGCAGAGGGTTAACCAATGTTTTCGAAATGCCTGCCAAAACTCCGGAATTCAATCGTGCATGACATTTATAGATTGTGGACATGGTGATAATCTCAACAGATTCGATTCTTATTCGACATGGAAGAGCTGGAGAGACAATGAGAATGCTAGCTCTTGCTTCACGCCAGATGGATTTCCTTACGGAATCTACGTTCAAGCAGTCAGTCTTACCACTGAAAGTAACATAATTACAAGATATATTTATTCACTCTTTTGGGGATTTCAGCAAATCAGCACTCTTGCTGGGAATCAAGTTCCAAGCTTTTTTGTGTGGGAAGTTCTGTTTACTATGGCCATTATTGGACTTGGTCTTTTGTTATTTGCTCTACTCATTGGAAATATGCAAAACTTCCTCCAGGCTCTGGGTCGGAGGAGGTTAGAAATGTCGTTAAGACGACGCGATGTCGAGCTATGGATGGGGCACCGGCGGTTGCCTGTAGAACTAAGAAGGCAAGTACGAGAAGCCGAAAGGTATAGTTGGGCTGCAACAAGAGGCGTCAATGAAGAAAGGCTTTTGGAGAATTTGCCCGAAGACCTTCAAAGAAACATACGACGGCATCTCTTTAGATTTTTAAAGAAAGTTCGGATTTTCTCGTTGATGGATGAACCTATTCTAGATTTGATACGGGAGAAATTGAGGCAGAAAACTTATATAAAAGGAAGTGAAGTTTTTTTCAACGGTGGTTTCATCGAGAAGATGGTTTTCATAGTGCGAGGAAAAATGGAGAGTTGTGGGGCCGATGGGATCGTGCTTCCACTGTCGGAAGGAGACGTTTGTGGGGAGGAACTTCTCGCTTGGTGTCTTGAACATTCTTCTGTGAATAAAGATGGAAAACGAATGGGAATTGCCGGACAGAGATTGCTTAGCAATCGGACAGTGCGCTGTTTGACAAATGTCGAAGCATTTTCGCTCCACGTGGCAGATCTTGAAGAAGTGACGAGTCTCTTTGCACGGATTTTGCGAAATCAGCGTGTTCAAGGAGCCATAAGGTATGAATCTCCTTACTGGAGATGCTTAGCTGCTAATCGGATTCAAGTAGCATGGAGATACAGGAAAAAGCGACAAACTCGTGCCGACTTGTCATGA 2283 42.53 MAGVDKDDIPMLSDTNPALYVEQVNSQFGSFNSLARNASVLVPIEGNLVSHSGPLRSERKAPFPQMSGPLLIMHNPVGGGFQSNTGNSEQSTKEPMKENFRSWEVNGGAGWSNRNDGRKNEHLLKFPLGQCNDPYCTTCPTYNIKTAQHKRSRGSGTFEHKFHNAFYGDAKGWARKFWSFLHPYIPGVMNPHTKIIQKWNKFFVISCLVAIFLDPLFFFLLSVQQENKCIVLDWPMTTALVVFRSVTDFIYLLHILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGFFVVDLFVALPLPQIIILLILPRSLGTSGANYAKNLLRAAVLVQYIPRLFRFLPLLVGQSTSGFVFETAWANFVLNLFTFMLSGHVVGSFWYLFGLQRVNQCFRNACQNSGIQSCMTFIDCGHGDNLNRFDSYSTWKSWRDNENASSCFTPDGFPYGIYVQAVSLTTESNIITRYIYSLFWGFQQISTLAGNQVPSFFVWEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVELWMGHRRLPVELRRQVREAERYSWAATRGVNEERLLENLPEDLQRNIRRHLFRFLKKVRIFSLMDEPILDLIREKLRQKTYIKGSEVFFNGGFIEKMVFIVRGKMESCGADGIVLPLSEGDVCGEELLAWCLEHSSVNKDGKRMGIAGQRLLSNRTVRCLTNVEAFSLHVADLEEVTSLFARILRNQRVQGAIRYESPYWRCLAANRIQVAWRYRKKRQTRADLS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12029994 12037143 - Bpe005900.1 Bpe12g00640 112653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00640 760 Gene3D Jelly Rolls 593 717 IPR014710 -
Bpe12g00640 760 ProSiteProfiles cAMP/cGMP binding motif profile. 595 663 IPR000595 -
Bpe12g00640 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 143 757 - -
Bpe12g00640 760 Pfam Ion transport protein 199 523 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bpe12g00640 760 SUPERFAMILY cAMP-binding domain-like 523 716 IPR018490 -
Bpe12g00640 760 Gene3D - 200 516 - -
Bpe12g00640 760 CDD CAP_ED 595 711 IPR000595 -
Bpe12g00640 760 Gene3D Helix hairpin bin 517 587 - -
Bpe12g00640 760 SUPERFAMILY Voltage-gated potassium channels 191 518 - -
Bpe12g00640 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 143 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00640 Bpe-Chr12:12029994 Bpe01g00647 Bpe-Chr1:4382640 9.66E-136 dispersed
Bpe12g00640 Bpe-Chr12:12029994 Bpe07g01072 Bpe-Chr7:16122315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00640 K05391 - jre:109012085 1082.78