Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00644 AAATTTCTGATGATACCCAATAGCTCTTGCCCTTCTCTCCCTTCTTGTGAACCATTTTCGTGCTTAGAAAATGGAACGAGTAACAAGAGGAAACGACGACCGGCGGGAACACCAGATCCAGATGCAGATGTAGTATCTCTTTCGCCCAAAACATTGCTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCGTGGAAACTGTTGAAGAGGGAGTCGCCGGCGGTGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTTTGCACCACGACCCCTGCCACGCCCTCGGAGATCTCGTCGGAATAAAAAAACATTTCCGGCGAAAGCACAGTAATCACAAGCAATGGGTTTGTGAAAAATGTTCCAAAGGATATGCAGTTCAATCAGATTACAAAGCTCATCTCAAAACCTGTGGAACAAGAGGCCATTCTTGCGACTGTGGCCGAGTTTTCTCAAGGGTGGAAAGTTTCATAGAACATCAAGATGCTTGCAACTTGGGTCGACTTCGGCCGGAATTGCAGACTCCTCAGCCGGCATGCTTATCTCGGACAGCTTCGAGTCTCAGCCCGACAAGTGATACCAACTTTACGAGTGCTCAGATTTGGCCATCAATGGCGACTCAAAAGAGAAAAGATGACATTTTCTTCCCCAACTCAAAAGAAAACACCCCCCAAGAAAATGCCCACCCTTACTATCACAATCTTGATCTTCAGCTCTCTACCACTTCATCAAATCCAACAGATATTTCTTCAGTTTCTCCGAAGAAAGACGAAAAGCAATCGACTCATTTGCAGCTCTCAATTGCTTCGTCTGATTTCATCAAGAAACTCCAATCGAACTCAGTGAAGGACGAGAAATCTCGGTTTGTTTCAGTTTCGAGGAGTATCAAAGAAGAAGAACAGCTGAGAATAGCCATGGCGGAAAAAGCTTGCGCCGAAGAAGCGAGAAAACAAGCAAAGAGACAGATTGAATTAGCAGAAGAAGAATTTGCAAATGCGAAGAGAGTTAGACAGCAGGCCCAGAATGAGCTAGAAAAAGCTCAAGCTTTTAAAGAACATGCAATCAAAAAGATGAACTCCACAGTTCTGCAAATCACGTGCCAAGCTTGTCAAAGAAGATTTCAGGCAAGAAGAACAGTTTTACCATCTTCAGAAAATGAGAATTCACTGGCTTTGAGTTATATTTCTTCGGTAATCACGACAGAAGGCGATCAAGTAGAAAAACATCATCAATTTAATCCATGA 1302 44.24 KFLMIPNSSCPSLPSCEPFSCLENGTSNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGRLRPELQTPQPACLSRTASSLSPTSDTNFTSAQIWPSMATQKRKDDIFFPNSKENTPQENAHPYYHNLDLQLSTTSSNPTDISSVSPKKDEKQSTHLQLSIASSDFIKKLQSNSVKDEKSRFVSVSRSIKEEEQLRIAMAEKACAEEARKQAKRQIELAEEEFANAKRVRQQAQNELEKAQAFKEHAIKKMNSTVLQITCQACQRRFQARRTVLPSSENENSLALSYISSVITTEGDQVEKHHQFNP 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12088773 12091003 + Bpe005904.1 Bpe12g00644 112657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00644 433 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 421 - -
Bpe12g00644 433 SMART c2h2final6 135 162 IPR013087 -
Bpe12g00644 433 SMART c2h2final6 58 80 IPR013087 -
Bpe12g00644 433 SMART c2h2final6 99 129 IPR013087 -
Bpe12g00644 433 Gene3D Classic Zinc Finger 35 100 - -
Bpe12g00644 433 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Bpe12g00644 433 Coils Coil 316 376 - -
Bpe12g00644 433 MobiDBLite consensus disorder prediction 257 280 - -
Bpe12g00644 433 Gene3D Classic Zinc Finger 120 194 - -
Bpe12g00644 433 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Bpe12g00644 433 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Bpe12g00644 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Bpe12g00644 433 PANTHER OS03G0310200 PROTEIN 13 421 IPR039288 GO:0009630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00891 Bpe-Chr7:14969061 Bpe12g00644 Bpe-Chr12:12088773 4.57E-19 dispersed
Bpe12g00480 Bpe-Chr12:10565123 Bpe12g00644 Bpe-Chr12:12088773 5.76E-14 dispersed
Bpe12g00644 Bpe-Chr12:12088773 Bpe09g00021 Bpe-Chr9:171971 4.20E-74 dispersed
Bpe02g01952 Bpe-Chr2:21439405 Bpe12g00644 Bpe-Chr12:12088773 8.33E-175 transposed
Bpe12g00644 Bpe-Chr12:12088773 Bpe07g01079 Bpe-Chr7:16162999 3.47E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22223 PF00096 zf-C2H2 0.004 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00644 K25871 - tcc:18589540 598.971