Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00647 ATGCGGATAGAAAATATGGTCTCTCTGATTTCGGCTCGAACAGGGAGACATCGGCAGCGGTACAACAAAGGATGCCGTCTAGTTGTAGGATGTATCCCATACAGATACAAGGACTCTAAGCAATCATTCTCCATTGATAATATGGAGGTGCTTGTTATTAGTTCTCAAAAGGGTCAAGCAATGTTATTCCCAAAAGGAGGGTGGGAGAACGACGAGTCTATGGAAGCTGCAGCTTCAAGAGAGACTTTGGAAGAAGCTGGTGTAATTGGGAAAATCCAAAGTAGATTGGGGAAGTGGCAATACAAGAGCAAGAGCCACAGCACAATGCACGAAGGCTACATGTTTTCTTTGCTTGTCAAAGAGCAGTTGAACCATTGGCCTGAGAAAAACTTCAGAAAACGAGAATGGATGAGTGTAGAAAAGGCTAAAGAAGCTTGTCCTCATTCATGGATGAAAGAAGCTTTAGATGTTTTAGTTAGTCAGCAAATGGAGCAAAAACAGAATGAATGTTTCTGTACATAA 522 41.95 MRIENMVSLISARTGRHRQRYNKGCRLVVGCIPYRYKDSKQSFSIDNMEVLVISSQKGQAMLFPKGGWENDESMEAAASRETLEEAGVIGKIQSRLGKWQYKSKSHSTMHEGYMFSLLVKEQLNHWPEKNFRKREWMSVEKAKEACPHSWMKEALDVLVSQQMEQKQNECFCT 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12128919 12130003 - Bpe005907.2 Bpe12g00647 112660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00647 173 ProSitePatterns Nudix box signature. 66 87 IPR020084 GO:0016787
Bpe12g00647 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 10 161 - -
Bpe12g00647 173 SUPERFAMILY Nudix 15 159 IPR015797 -
Bpe12g00647 173 PANTHER NUDIX HYDROLASE 4-LIKE 2 167 - -
Bpe12g00647 173 Pfam NUDIX domain 48 153 IPR000086 -
Bpe12g00647 173 CDD Nudix_Hydrolase_9 27 152 - -
Bpe12g00647 173 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 2 167 - -
Bpe12g00647 173 ProSiteProfiles Nudix hydrolase domain profile. 24 159 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00647 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - gmx:100800531 232.646
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01087 Bpe12g00647 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00647 Bpe-Chr12:12128919 Bpe13g00839 Bpe-Chr13:14623360 1.05E-41 dispersed
Bpe13g01011 Bpe-Chr13:15860793 Bpe12g00647 Bpe-Chr12:12128919 5.16E-67 transposed
Bpe14g00072 Bpe-Chr14:1163740 Bpe12g00647 Bpe-Chr12:12128919 6.06E-70 transposed
Bpe12g00647 Bpe-Chr12:12128919 Bpe07g01087 Bpe-Chr7:16234319 2.38E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g175 . . . Bda15g00560 Bpe12g00647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00124 Blo15g00019 . . Bpe07g01087 . . Bma08g00106 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014882 1 0 2 1 2 0 2 0 0 0 0 0 2 0 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00647 Bpe_Chr12 FPKM 16.828829 22.60663 15.565811 18.762224 3.402959 0.0 5.353445 59.773659 54.149544 53.183666