Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00659 ATGGATGATCTCTACGCAATCCATTCACCTGATGATTACTCCGTTCAGTCTCGTATTGCACTGCCGGAGAACATCCTATTTCTTGTCAATCATCAACTTTCTTACTCGGATTATTTGGATCTTCCGGATTTTGGGTCGCCGCACTTGTTGCCTTCGGCGGTGTCTGACGCTGGTTCTGTTGCGGCGGAGATACAGAGAGCAGCTCCCGTTGAAGAGCAGATGATCACTGATGGAGTTAGAACGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTCTCGACGCTTATATCGATTGTCAGAAGGTGGGTGCGCCGCCGGAGATAGCGTACCTGCTGGACGAAATCAGAGTAGGAACCACCGCCATGTCAACCTGTTACGGTGATGATCCAGAACTGGACGAGTTCATGGATAAGTATTGCAGTATACTGGTTAAGTATAAATCAGATCTCTCCCGGCCTTTTGAGGAAGCATCCTCTTTTCTGAACAAAATTGAAACGCAGCTCAATACCCTTTGCAATGGCGCCTCTAGAAGCTACGTTGCTGATGAAGTTGCCAATTTTTCGGATGAAGATTTAAGGACAGGAGAGACGGAGGTGGAGTGTCCTCCGACGAACGAAGATCGTGAGCTTAAGGATAAACTATTACGCAAATATAGTGGTTATATCACTACCCTAAAGCAGGAGTTTTCGAAGAAGATAAAGAAAGGAAAACTGCCAAAGGAAGCTAGGCAAAACTTGCTGGATTGGTGGAATGTCCATTACAACTGGCCTTACCCTACGGAGGCGGATAAAGTTTTGTTGGCGGAATCGACGGGGTTAGACCAGAAACAGATAAACAACTGGTTTATAAACCAAAGAAAACGCCATTGGAGACCATCGGAAAACATGCAGTTTGCAGTCATGGACAGTCTATGTGGACATTTTTCGATGAAGGGATGA 939 45.69 MDDLYAIHSPDDYSVQSRIALPENILFLVNHQLSYSDYLDLPDFGSPHLLPSAVSDAGSVAAEIQRAAPVEEQMITDGVRTKIASHPLYPKLLDAYIDCQKVGAPPEIAYLLDEIRVGTTAMSTCYGDDPELDEFMDKYCSILVKYKSDLSRPFEEASSFLNKIETQLNTLCNGASRSYVADEVANFSDEDLRTGETEVECPPTNEDRELKDKLLRKYSGYITTLKQEFSKKIKKGKLPKEARQNLLDWWNVHYNWPYPTEADKVLLAESTGLDQKQINNWFINQRKRHWRPSENMQFAVMDSLCGHFSMKG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12206010 12211464 + Bpe005919.1 Bpe12g00659 112672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00659 312 Pfam ELK domain 209 230 IPR005539 GO:0003677
Bpe12g00659 312 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Bpe12g00659 312 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Bpe12g00659 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 311 - -
Bpe12g00659 312 SMART HOX_1 231 296 IPR001356 GO:0003677
Bpe12g00659 312 CDD homeodomain 241 293 IPR001356 GO:0003677
Bpe12g00659 312 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 42 311 - -
Bpe12g00659 312 SUPERFAMILY Homeodomain-like 231 304 IPR009057 -
Bpe12g00659 312 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Bpe12g00659 312 Pfam KNOX2 domain 126 172 IPR005541 GO:0003677|GO:0005634
Bpe12g00659 312 Pfam KNOX1 domain 80 116 IPR005540 GO:0003677|GO:0005634
Bpe12g00659 312 Gene3D - 234 295 - -
Bpe12g00659 312 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Bpe12g00659 312 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Bpe12g00659 312 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Bpe12g00659 312 SMART ELK_2 131 151 IPR005539 GO:0003677
Bpe12g00659 312 SMART ELK_2 209 230 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00017 Bpe-Chr8:128311 Bpe12g00659 Bpe-Chr12:12206010 7.19E-82 dispersed
Bpe11g01776 Bpe-Chr11:14122221 Bpe12g00659 Bpe-Chr12:12206010 2.95E-99 dispersed
Bpe12g00659 Bpe-Chr12:12206010 Bpe13g01476 Bpe-Chr13:20040897 6.56E-102 dispersed
Bpe12g00659 Bpe-Chr12:12206010 Bpe07g01088 Bpe-Chr7:16241195 2.49E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22226 PF03791 KNOX2 1.50E-23 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00659 - - vvi:100243290 413.305