Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00665 ATGTTGTGCAGAAAAAAATCTCAGGAAATGGCTTCATCAAGCTCATACAATTCACCATGTGCGGCCTGCAAGTTCTTGAGGAGAAAGTGTATGCCTGGCTGCATATTTGCGCCGTATTTCCCACCCGAGGAGCCTCAGAAGTTCGCCAACGTCCACAAGATATTCGGAGCCAGCAATGTTACCAAGCTCCTCAACGAACTCCTCCCCCACCAACGCGAAGACGCCGTCAATTCCCTTGCCTACGAGGCTGAGGCTCGAGTCCGAGACCCCGTCTACGGCTGCGTCGGAGCCATCTCCTTCCTCCAACGTCAAGTCCAACGGCTTCAGAAAGAGCTCGATGCCGCCAATGCCGACCTCATCCGCTACGCTTGCCCCGAGATCCCTTCCTCCATCTCCGCACCGTCTGGGGTAAACGTGTTTGGCCGGAGAGGCGGAAACAGTGGAGGAGGTGACGGAGGAGGAGGGTATTATCCGCCTCCTTCTTTCCCTATGCCCTTTCCCCTACCTTGGAATGATGATGAGGACATCCATGGAGGAGGAGGAGCAGGAGCAGGTCAAGGAAGTATGTGA 570 55.26 MLCRKKSQEMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACPEIPSSISAPSGVNVFGRRGGNSGGGDGGGGYYPPPSFPMPFPLPWNDDEDIHGGGGAGAGQGSM 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12311949 12312518 - Bpe005925.1 Bpe12g00665 112678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00665 189 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Bpe12g00665 189 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Bpe12g00665 189 Coils Coil 98 118 - -
Bpe12g00665 189 PANTHER ELONGATED PETIOLULE 1 10 184 - -
Bpe12g00665 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00855 Bpe12g00665 CCT
Bpe07g00855 Bpe12g00665 ECH
Bpe12g00665 Bpe13g00250 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01519 Bpe-Chr11:11281461 Bpe12g00665 Bpe-Chr12:12311949 7.04E-73 dispersed
Bpe12g00665 Bpe-Chr12:12311949 Bpe13g00250 Bpe-Chr13:10454390 9.49E-80 dispersed
Bpe12g00665 Bpe-Chr12:12311949 Bpe07g00855 Bpe-Chr7:14679814 1.63E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22227 PF03195 LOB 3.00E-42 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00665 - - cmos:111430134 253.832