Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00678 ATGGCACCTTCCCTCTGCAAACTCCAACTCCGCTTCCTCAACTTCGTCTCCTTCCTCCTCCTCATCAATGGAAGATTCGATCTCGACCCTTCAGATTTCAAGGCTTTCTCAATCATCGCCAACGACTTGGGAATCAAGGGTCAATTTGCAGCCTCCGCCAATCCATGCAACACCGCTGGCGTAATCTGCGAAAAGCGGCTCTCAAACAACAGCTATGTGTTAAGAATTACTAGGCTCGTGTTTAGATCCAAAAAGCTTACGGGATTTCTTTCTCCGGCAATCGGACGGCTGTCGGAGCTCAAAGAGCTGTCTGTTTCTGACAACTTTCTCGTTGACCAAATACCAGCCCAAATCGTTGACTGCCAGAAACTCGAAATTCTTGACTTTCGTAAGAACAGATTTTCTGGGAAAGTTCCTTCTGGGTTGTCGTCTCTCCTACGCCTTAGAGTTCTCGATCTATCCTCCAATGAACTTTCAGGGAATCTGGGTTTCTTGAAGTATTTTCCCAACCTGGAAAGTCTCTCCGTAGCAGACAATCATTTCACTGGGAAAATCCCATCTTCAGTCCGTTCATTTCGCAATCTCCGAGTTTTCAACTTATCTGGAAATAGCTTTCTCACTGGTTCAGGTACATCAATGAAAGCGGTAGACTACCCAGGATCTGATATTCCCAAACGTTACATTTTAGCGGAGAATTCAACTCCAAATATAACGAGGGATTCTGCAGCCGCTCCCCTGGCAAGCGCTGCAGCTCCATCTCCATCTCCAACAGCAGTAACACACGAGCATAAAAAGCGGAATCGAAAGCTAATAGGCTCATTACTTGGATTTTGTGCTGGAGCATTAGCCGGAACCGTATCTGGGTTTATCTTCACTGTGTTATTTAAGCTCATTCTGCGTGCCATTAGAGGTGGAGGAAAGAAACCGGGCCCGGCAATATTCAGTTCAGGAATCAAAGCAGAAGACTTGGCTTTCTTGGAGAAAGACGACGGGTTGGCAGCATTGGTATCGATTGGCAAAGGTGGCTGTGGAGAAGTTTACAAAGCTGAATTACCTGCAAGCAATGGGAGAATAATTGCCATAAAGAAGATTATTCAGCCAAAGGAAGCACAAGAAGCCACTGATGAAGAAAGTAAGTTAATAATGAACAAGAAAATGCGTCAAATAATGTCTGAAATAAATACCGTGGGACAAATCCGGCATCGAAATCTTCTTTCTCTACTGGCTCATGTCTCACGTCCTGATTGCCATTACCTTGTCTATGAATTCATGAAAAATGGTAGCTTACACGATATACTGAATGAGGTATCAGAAGGAAGAAGAGAGCTAGATTGGCTTGATAGGCACCGAATTGCCCTTGGAGTGGCATCCGGGCTCGAATATCTTCACACCAACCAGAATCCGCGCATAATTCATAGAGATCTCAAGCCAGGAAATATCTTACTAGACGATGACATGGAAGCTCGAATAGCAGATTTTGGGCTGGCAAAAATAATACCTGATGCGCTTACTCATATCACAGCTTCTAATGTAGCTGGAACCGTTGGTTACATAGCACCCGAATATCATCAGACTCTGAAGTTCACTGACAAATGTGACATCTACAGCTTTGGGGTGGTGCTCGCAGTCTTGGTTATGGGGAAGCTTCCATCTGATGAGTTTTTCAGAAACACAGATGAGATAAGTTTGGTCAAGTGGATGAGAAAGGTGATGACTTCAGAGAATCCTCGGATAGCCATTGATCCAAAGCTAATGGGAAATGGCTGGGAGGACCAAATGCTCTTGGTCCTGAAGATTGCTTGCTTCTGCACTCTAGAAGATCCTAAACAAAGACCAAACAGCAAAGAAGTTAGATGCATGTTATCTCAGATCCAGCACTAG 1881 44.6 MAPSLCKLQLRFLNFVSFLLLINGRFDLDPSDFKAFSIIANDLGIKGQFAASANPCNTAGVICEKRLSNNSYVLRITRLVFRSKKLTGFLSPAIGRLSELKELSVSDNFLVDQIPAQIVDCQKLEILDFRKNRFSGKVPSGLSSLLRLRVLDLSSNELSGNLGFLKYFPNLESLSVADNHFTGKIPSSVRSFRNLRVFNLSGNSFLTGSGTSMKAVDYPGSDIPKRYILAENSTPNITRDSAAAPLASAAAPSPSPTAVTHEHKKRNRKLIGSLLGFCAGALAGTVSGFIFTVLFKLILRAIRGGGKKPGPAIFSSGIKAEDLAFLEKDDGLAALVSIGKGGCGEVYKAELPASNGRIIAIKKIIQPKEAQEATDEESKLIMNKKMRQIMSEINTVGQIRHRNLLSLLAHVSRPDCHYLVYEFMKNGSLHDILNEVSEGRRELDWLDRHRIALGVASGLEYLHTNQNPRIIHRDLKPGNILLDDDMEARIADFGLAKIIPDALTHITASNVAGTVGYIAPEYHQTLKFTDKCDIYSFGVVLAVLVMGKLPSDEFFRNTDEISLVKWMRKVMTSENPRIAIDPKLMGNGWEDQMLLVLKIACFCTLEDPKQRPNSKEVRCMLSQIQH 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12404316 12406196 + Bpe005937.3 Bpe12g00678 112691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00678 626 ProSiteProfiles Protein kinase domain profile. 332 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00678 626 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Bpe12g00678 626 Gene3D Transferase(Phosphotransferase) domain 1 424 626 - -
Bpe12g00678 626 SUPERFAMILY L domain-like 56 206 - -
Bpe12g00678 626 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00678 626 Gene3D Ribonuclease Inhibitor 33 225 IPR032675 -
Bpe12g00678 626 CDD STKc_IRAK 338 624 - -
Bpe12g00678 626 SUPERFAMILY Protein kinase-like (PK-like) 337 621 IPR011009 -
Bpe12g00678 626 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 626 - -
Bpe12g00678 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Bpe12g00678 626 Gene3D Phosphorylase Kinase; domain 1 329 423 - -
Bpe12g00678 626 SMART serkin_6 332 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00678 626 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 7 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00571 Bpe-Chr1:3689543 Bpe12g00678 Bpe-Chr12:12404316 9.37E-59 dispersed
Bpe12g00678 Bpe-Chr12:12404316 Bpe03g00359 Bpe-Chr3:8525689 4.48E-07 dispersed
Bpe12g00678 Bpe-Chr12:12404316 Bpe05g01126 Bpe-Chr5:23594152 6.83E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63638 PF00069 Pkinase 4.00E-45 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00678 - - pavi:110751499 861.292