Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00679 ATGGGCGGGGTTACTTCTTCAATGGCAGCGAAATTCGCCTTTTTTCCCCCAAACCCACCTTCGTACAAAGTTGTGAAAGACGAAGCCACTGGTTTATTGCTGTTGGACCCGATTTCGCACCGGGAAAACGTCGACGTCTTGAAGATTCCCACTCGCCGGGGGACCCAGATCGTGGCCGTGTATGTCCGGTATCCGATGGCGACGTCTACCCTTCTCTATTCCCATGGTAATGCTGCTGATATTGGCCAGATGTACGAACTTTTCCTCGAGCTCAGCATTCACTTGAAGGTCAATTTAATGGGGTATAATCATTTTGGATATTGGAGTCTATCAAATGGGCATCTGATTGAGCCTCTAGATCTAAATTCTATCTTAAATGATCAAGTACGAACCGTACATAAGACAAGATTTTCAATAATCAGCGTTCTAAAACTGAAGTTCTGGTTTCTGGAAGAGAATTCTTGGCTTCAAATTCGTACATACGATTACTCTGGCTATGGGCAGTCAACTGGAAAGCCAAGTGAGCAGAATACTTATGCAGACATCGAAGCAGCCTATAAGTGCCTCGAAGAGAACTACGGAGTGAAGCAGGAGGATATAATTCTATATGGCCAATCAGTTGGAAGTGGCCCCACTTTAGAGTTAGCGGCAAGATTGCCGAGATTAAGAGCAGTGGTTTTGCATAGTCCTATATTGTCGGGGCTCCGAGTCATGTACCCAGTGAAGCGCACCTACTGGTTTGACATCTATAAGAATATCGACAAAATCTCGTTGGTGAAGTGCCCCGTTTTGGTAATTCATGGAACTTCTGACGAAGTTGTCAACTTCTCTCACGGCAAACAGTTATGGGAACTATGTCAAGAGAAGTATGAACCATTATGGCTCAAAGGGGGAAACCATTGTGATTTGGAGCTCTTCCCAGAATATATAAAGCATCTCAAGAAATTTGTATCGTCAGTCCAGAACTCGCCTTCCCAAAGAAACAATTCAAGGAGAAGCGTAGATAGAGCTGACCAACCCCGAAAGAGCACAGATTTCTTTGAGGCTCCGAGGAAGAGCACCGACAAGAGAGAGAAACCTAGGAAGAGCACGGATAAATTTGAAAAACTAAGATTGCATGGATACAAATTGAACCGCATTGAAGAGTTAGACAAGTCTAGAATTATGCACAACCAAAAAGAGAGATCGAGAAGAAGCGTGGACTACCATGAAAAACCTCGGAGAAGCATCGATCAACAGCTGGAAAAAGGACGGAAAAGCGTGGACTGGTTGGACAGAATCCGGGCCGGATGA 1293 44.78 MGGVTSSMAAKFAFFPPNPPSYKVVKDEATGLLLLDPISHRENVDVLKIPTRRGTQIVAVYVRYPMATSTLLYSHGNAADIGQMYELFLELSIHLKVNLMGYNHFGYWSLSNGHLIEPLDLNSILNDQVRTVHKTRFSIISVLKLKFWFLEENSWLQIRTYDYSGYGQSTGKPSEQNTYADIEAAYKCLEENYGVKQEDIILYGQSVGSGPTLELAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKISLVKCPVLVIHGTSDEVVNFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIKHLKKFVSSVQNSPSQRNNSRRSVDRADQPRKSTDFFEAPRKSTDKREKPRKSTDKFEKLRLHGYKLNRIEELDKSRIMHNQKERSRRSVDYHEKPRRSIDQQLEKGRKSVDWLDRIRAG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12410661 12413440 + Bpe005938.2 Bpe12g00679 112692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00679 430 MobiDBLite consensus disorder prediction 386 417 - -
Bpe12g00679 430 MobiDBLite consensus disorder prediction 331 368 - -
Bpe12g00679 430 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 109 - -
Bpe12g00679 430 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 158 376 - -
Bpe12g00679 430 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 109 - -
Bpe12g00679 430 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 158 376 - -
Bpe12g00679 430 SUPERFAMILY alpha/beta-Hydrolases 160 318 IPR029058 -
Bpe12g00679 430 Pfam Prolyl oligopeptidase family 175 296 IPR001375 GO:0006508|GO:0008236
Bpe12g00679 430 Gene3D alpha/beta hydrolase 156 320 IPR029058 -
Bpe12g00679 430 MobiDBLite consensus disorder prediction 320 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00679 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - egr:104426208 574.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01087 Bpe12g00679 CCT
Bpe07g01087 Bpe12g00679 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01511 Bpe-Chr11:11214190 Bpe12g00679 Bpe-Chr12:12410661 0 dispersed
Bpe12g00679 Bpe-Chr12:12410661 Bpe13g01362 Bpe-Chr13:18852945 7.41E-100 dispersed
Bpe12g00679 Bpe-Chr12:12410661 Bpe09g00527 Bpe-Chr9:14045730 4.21E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00679 Bpe_Chr12 FPKM 37.544197 38.084297 3.431632 3.319287 18.624685 12.577422 17.595486 10.528193 11.20688 9.798752