Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00681 ATGGCTGATGGAAGGAGGCATTCTGTTGATATTCCCATCTCCAAAACTCTTGTAGCACTGAGGAGAGTAAGGTCGCTGAGAGATCCTTCGACAAATTCCATGACCAGATTCTCTGGATTGACTGATGATGTCAATTGGGAAACCAATTCAAACAATGAAATTTCAATACATTTCTTGAATCGTTCTAGGGAAGAAGTAGCCAATAATTATGGTGTATCAAAGACGAAGAATTTATGTTTGTCTAGAGACGAAAAGCACTTTTTTGATGAGATCACAAAGACAAAGTTGATCTTGTGCCAGAAATCAGGACGGAAAGGCATTTTGAGTTCTCCTAGTACGACAAAAGGTGCTGATATATTGCCTTGTGATGGACATGAATCAATAAAGGAAAAGTACTTTTCTTCTAGCAATGCTTTTGGGGAGGATGTCGGTTCGTCGAATGAATTGATCATGAGATCATCACAAACTGAAAAATTGGATCGAACAAGAAAATCCCGATGTAAGAATCAGGTCCTACCATCTTGTTCAGCAGGTGGTGAAACCATAAGTCAAGTTAGCAGCCCACTTCAATCCATTGTAAGTGGTGTGTCGAAACTTAGCTTGTCCCCGTATTTGAATGAAGAGGTTGATGTTGTAGATCAAAACCACCATGGTTGTGGCATTGGCTGCTGCTGGTCCCAAACGCCGAAATTCAAGGACTCAAATCTTTATTCCGAGGTAGAAGGTTACCCATTATTGCGTGGAAGTGTCGACGAAATAGGTCTCTACAGACAGAGCCAGTGGGGTTTGAAACATGTCAACAAAGAAACATTATCAAGTTCTGGAACTCCGAGGAATTTGTGTCAGAAATACAGGCCGACATCTTTCGACGACTTGGTGGGACAAAATGCTGTGTCGAAATCTCTTCAGGGGGCCGTCTTGGTCGGAAGGATTTCCACTTTCTATCTCTTTTACGGGCCCCGTGGGACCGGAAAGACCTCCGCCTCGAGGATATTTGCTGCAGCACTGAATTGCCTTTCGCTCGAGGAGCGGAGACCATGCGGTTTATGTCGAGAATGTGTTTCGTTCTTTTCCGGGAGAAGCAGAGATATACAGGAAGTAGAGTCTCTTAGAATGAATAAAACAGACAGGATTAGGTCTCTCGTTAAAAATGCCATTAGTCCTTCAGTGTCTTCGCGGTTTAAGGTTTTCATTATTGATGAGTGCCATATGTTACGAGGGGAAACATGGGCAACTTTGTTGAGTAGCTTCGATAACTTTTCTCAACATTCTGTTTTTATAATGATCACTCCTGACCTCGACCGGCTGCCGAGAAGCGTTGTATTACAGTCCCAAAAATTTCATTTTCCGAAAATAAGAGAGGCTGATATTGCTAGTAGATTGGGAAAAATTTGTCTTGAAGAGCGGCTGGACTTTGATCCTGAAACTTTAGACTTCATTTCTTCAAAATCGAATGGTTCCATCAGGGATGCTGAAATGATGCTCGAACAGCTGAGCTTGCTCGGTAAAAAAATCACTTCGTCGATGGCTCGTGAGCTTATTGGGATTGTTTCGGATGAAGAATTGCTTGATTTGCTGGACTTAGCCTTGTCATCGGACACTTCTAATACTGTAATAAAGGCGAGGGAGTTGATGAGATCGAGGATTGATCCAATGCAACTTATTTCACAGTTGGCTAATCTCATCATGGACATTCTTGCTGGTAAACACGAACAAGCTTCTTTGGAAGTAAGAAGAAAGTTCATTACTAACCACTCTGCCGAAGCAGATGTGCAGAAACTGAGCCACGCATTGAAAATACTCTCGGAAGCTGAAAAACAATTAAGAATTTCAAAGAATCAAACGACGTGGCTTACCGTTGCTCTACTTCAGTTAAGCTCCGTGGAGTCATTCTCCTCGAACTCCCACGAAGCAAAGTTATGTTTGAGAAATATCAGCGATAAAGATGGTGATTTTTGCAGCAGATCCTCTGGTGGGGAGAGCTTGAAACATCTTGTCCCTTCTTGTGATGACATCAAATTTGGTGGAGTTGGAGTGACTGATGAATGCAAAGAAACATTGGACTCCATATGGAAAAGAGCAGCTGAGTTATCCCAATCTAATTCCATTAAAAAATTCCTCACGAAACAAGGGAAATTATCCGCTCTTTCGCTCAATCACGGTCTAGCAATAGCTGAATTGGAATTTTCCCGTCCCAGCCACGTGACTCGAGCTGAGAAGTCCTGGAAACAGATCGCAAGTTCACTTCAGACCGTGTTGGGACGGAATGTGGAGATTAGAATCAATCTCTCCGAGCGAAATTCCGACTTAAAACGCTCCAAAATGTGGAGACTATCTTTCAGCTTTTTTGGTTGCTCTCGCAGAAATAGGCAGAAGGAAACACGGCTTATCACAGAATGTTTTAGCGATTCCGGCTTTAAAGATTGCGATTCCGAGAAGCTTTCAACAACAGAAACGAGATTTTTGACTTGTTCTTCTTGTTGTGGTCCTCTCAACTGCACTCACAAAGTGGAGTGTTTTAGGAATCTGAGAAACAGCGATGGAAATGTGTTGAGCACAATGGCCATTACGCCCCAAGATGACGGCCTAAAGGTGCCCTGA 2601 42.75 MADGRRHSVDIPISKTLVALRRVRSLRDPSTNSMTRFSGLTDDVNWETNSNNEISIHFLNRSREEVANNYGVSKTKNLCLSRDEKHFFDEITKTKLILCQKSGRKGILSSPSTTKGADILPCDGHESIKEKYFSSSNAFGEDVGSSNELIMRSSQTEKLDRTRKSRCKNQVLPSCSAGGETISQVSSPLQSIVSGVSKLSLSPYLNEEVDVVDQNHHGCGIGCCWSQTPKFKDSNLYSEVEGYPLLRGSVDEIGLYRQSQWGLKHVNKETLSSSGTPRNLCQKYRPTSFDDLVGQNAVSKSLQGAVLVGRISTFYLFYGPRGTGKTSASRIFAAALNCLSLEERRPCGLCRECVSFFSGRSRDIQEVESLRMNKTDRIRSLVKNAISPSVSSRFKVFIIDECHMLRGETWATLLSSFDNFSQHSVFIMITPDLDRLPRSVVLQSQKFHFPKIREADIASRLGKICLEERLDFDPETLDFISSKSNGSIRDAEMMLEQLSLLGKKITSSMARELIGIVSDEELLDLLDLALSSDTSNTVIKARELMRSRIDPMQLISQLANLIMDILAGKHEQASLEVRRKFITNHSAEADVQKLSHALKILSEAEKQLRISKNQTTWLTVALLQLSSVESFSSNSHEAKLCLRNISDKDGDFCSRSSGGESLKHLVPSCDDIKFGGVGVTDECKETLDSIWKRAAELSQSNSIKKFLTKQGKLSALSLNHGLAIAELEFSRPSHVTRAEKSWKQIASSLQTVLGRNVEIRINLSERNSDLKRSKMWRLSFSFFGCSRRNRQKETRLITECFSDSGFKDCDSEKLSTTETRFLTCSSCCGPLNCTHKVECFRNLRNSDGNVLSTMAITPQDDGLKVP 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12421187 12424167 + Bpe005940.1 Bpe12g00681 112694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00681 866 CDD AAA 315 444 - -
Bpe12g00681 866 Gene3D - 453 515 - -
Bpe12g00681 866 Pfam DNA polymerase III, delta subunit 294 452 - -
Bpe12g00681 866 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 100 854 - -
Bpe12g00681 866 Gene3D - 271 450 IPR027417 -
Bpe12g00681 866 Gene3D - 516 630 - -
Bpe12g00681 866 Pfam DNA polymerase III subunits gamma and tau domain III 506 635 IPR022754 GO:0003887
Bpe12g00681 866 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 100 854 - -
Bpe12g00681 866 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 279 625 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bpe12g00681 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 501 IPR027417 -
Bpe12g00681 866 CDD HLD_clamp_pol_III_gamma_tau 452 515 IPR045085 -
Bpe12g00681 866 SMART AAA_5 311 471 IPR003593 -
Bpe12g00681 866 SUPERFAMILY post-AAA+ oligomerization domain-like 516 628 IPR008921 GO:0003677|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00681 - - - qsu:112002109 920.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00746 Bpe-Chr8:9104893 Bpe12g00681 Bpe-Chr12:12421187 1.24E-89 dispersed
Bpe12g00681 Bpe-Chr12:12421187 Bpe14g00388 Bpe-Chr14:3651418 6.53E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g878 . . . . Bpe12g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0193 Cone19ag0187 . . . . Blo13g00158 Blo15g00239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004154 1 1 4 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00681 Bpe_Chr12 FPKM 0.866029 0.776491 2.197127 2.21571 2.485476 2.683306 2.256612 2.173817 1.857962 2.763929