Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00685 ATGGAAGATTCAGGCGCCATTCTCTGCCATATTTCTTCTCTCAAGGACATGCTCGATCAGGCGAGCTTCTTCACCTATTCGTTTTCTCTCGATTGTTCCCTCGTGAACGACGAAATTGAAGCAAATATTCAGATTACGCGCGAGATTGAATCGGAGATTGTCAAATGCTCAGAGGTTGAGTCTGTTTTGGCTTCCAGAGAGTCAGAGTTGACGAAGTCGCTTTATATGTTGCAGTTTGACATTAATGGATTGATGTCTGTTGCCGCTGAATCGAGAACTTGGGTAAAAAAATTGGAGCAGGAAATATGTTGTCTAAGAACAATGCGTGATGATATTGTTACTCGTTTGCATGAAAAGCGTGAAGAATTCTGTATGCGCTGCCGAGCATTCCAGAGAGATGTTGTGAACAATGATAATGAGCAAATATTGGCTTTAATATCAGAGAAAGAGTCCCTTGAAGATGAAATTCAAAGATTGGATAAGAAAAATTACGCTTTGAAGAATTCATTGTCTGCGCTTGTGGATGATATCTTACAAGAACTTCACACTTCCAACTCTGCTATGGATGTTCATATACAAAGTCGGAATCGAGAAAATGAAGAGCTGATGAAGGACATTGATAATTTGAAGAGCACATTGCTTTCAGTCATTACAAGTAATGATGGCACATACTGA 675 39.7 MEDSGAILCHISSLKDMLDQASFFTYSFSLDCSLVNDEIEANIQITREIESEIVKCSEVESVLASRESELTKSLYMLQFDINGLMSVAAESRTWVKKLEQEICCLRTMRDDIVTRLHEKREEFCMRCRAFQRDVVNNDNEQILALISEKESLEDEIQRLDKKNYALKNSLSALVDDILQELHTSNSAMDVHIQSRNRENEELMKDIDNLKSTLLSVITSNDGTY 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12443224 12445506 - Bpe005944.2 Bpe12g00685 112698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00685 224 Coils Coil 135 169 - -
Bpe12g00685 224 Coils Coil 192 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00685 - - - qsu:112019920 239.965
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00865 Bpe12g00685 CCT
Bpe07g00865 Bpe12g00685 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g357 . . . Bda15g00524 Bpe12g00685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00070 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019280 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00685 Bpe_Chr12 FPKM 9.742364 8.544331 14.692077 14.652529 11.22085 10.790707 11.90063 13.066917 13.270861 14.275812