Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00703 CTGAGCTACATGTCTTCCATTCCCAGCGACGACGAAGATGAGAACTTATCAGGCGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCTCTAAGGCGAGCGTGCTTGCTCACCGGGACGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGCGACGCTTGCTCCGGCGGACTTGTTCCTGTCTGTGAAAGTGATGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGACCGGTTCTCGATGTCTAACGAGGAGTATCAACATCTGTCTGTGAAACCTAGAAATACTATTCCTCCTGTGACGTCCGACGATGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAACGACGCTTTGCGGCCTATGATAAAGGTAGGCTTCTGTGCTTTAAGGAATGTTACAATAAATTATCTAGCATTTCTGGGATAGAGTGCCCAAACTCAGAGGAACTTTGTAATACTGTCCATAACCCAAGTAATGTGGATCAGAATCCTTCCTACGCAATATGGAAACTACCTAATGCTTACATATCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCAATAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGCTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCGTTGTCCCAGAAGAAGGATCCACGTGTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCCACCATGCTTTGTGGTCCGGTGGAGAATTCTCATGTTGCAAAGTATAGAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAACTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCATCATTGGTGCTTGTTTTTCTTGACAGTGGTACTGTGGAATCGCCTGGAGAGTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTCAATTGGGAAAGATTGGCTTCCATGTATGTTGGGGGTCGGTCTGGTGCAGAATGTCAAGCAAGGTGGCTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACTGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCGCTGGGGACTAATAGAACTCCTTGTCAGTGCCTATCACGCTATCAGAGGAGTTTAAATGCTTCGATACTCAAAAGAGAGTGGACCAAGGAGGATGATGATAAACTTCGTTCTGCTGTAGAAACAATTGGTGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGGCAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCTGCAAGAACTAGAAGAGGGCCATTCACACCTGTTGAAGACAAGCGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATTCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTAAAAAGAGGCAACTGGACTGACGAAGAGGATCGGATGCTTTCAGCAGCGATTAGAGAACACGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACAAAATTATTTCCAAATGAAGTTCCATTGCTCCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCAGAAAGATCTACCCTTCTTCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGTCAATCCTTCGCAGAAAAGGAAGAGAAAGCTGAGGTCTGATTCATAG 2061 42.79 LSYMSSIPSDDEDENLSGEEAEGGFDEDIEALRRACLLTGTDPDDCSYQSLSVGVGDACSGGLVPVCESDGDDDLELVRSIRDRFSMSNEEYQHLSVKPRNTIPPVTSDDEEDDFETLRAIQRRFAAYDKGRLLCFKECYNKLSSISGIECPNSEELCNTVHNPSNVDQNPSYAIWKLPNAYISLTSPLQGSGLPKSAIAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRVQLISVEKLCTSKDLSKVKDKKVSTMLCGPVENSHVAKYRMALTMFPLSLERKKWSKTEKENLGKGIKQQFQEMALQISSLVLVFLDSGTVESPGESNDIDNILESIKDFDFTPEKIREFLPKVNWERLASMYVGGRSGAECQARWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASILKREWTKEDDDKLRSAVETIGVGDWQAVASALEGRAGTQCSNRWKKSLDPARTRRGPFTPVEDKRLKIAVMLFGPKNWNKKAQFLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDRMLSAAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENVNPSQKRKRKLRSDS 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12573083 12584118 + Bpe005963.1 Bpe12g00703 112716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00703 686 ProSiteProfiles Myb-like domain profile. 570 620 IPR001005 -
Bpe12g00703 686 Gene3D - 312 413 - -
Bpe12g00703 686 ProSiteProfiles Myb-like domain profile. 412 464 IPR001005 -
Bpe12g00703 686 CDD SANT 472 516 IPR001005 -
Bpe12g00703 686 Gene3D - 574 623 - -
Bpe12g00703 686 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 21 682 - -
Bpe12g00703 686 SUPERFAMILY Homeodomain-like 449 518 IPR009057 -
Bpe12g00703 686 SMART sant 469 518 IPR001005 -
Bpe12g00703 686 SMART sant 522 571 IPR001005 -
Bpe12g00703 686 SMART sant 574 622 IPR001005 -
Bpe12g00703 686 SMART sant 416 466 IPR001005 -
Bpe12g00703 686 SMART sant 312 413 IPR001005 -
Bpe12g00703 686 SUPERFAMILY Homeodomain-like 520 616 IPR009057 -
Bpe12g00703 686 Pfam Myb-like DNA-binding domain 473 534 - -
Bpe12g00703 686 ProSiteProfiles Myb-like domain profile. 465 516 IPR001005 -
Bpe12g00703 686 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 465 520 IPR017930 -
Bpe12g00703 686 Gene3D - 521 573 - -
Bpe12g00703 686 CDD SANT 373 410 IPR001005 -
Bpe12g00703 686 ProSiteProfiles Myb-like domain profile. 518 569 IPR001005 -
Bpe12g00703 686 SUPERFAMILY Homeodomain-like 393 461 IPR009057 -
Bpe12g00703 686 Pfam Myb-like DNA-binding domain 575 619 IPR001005 -
Bpe12g00703 686 Pfam Myb-like DNA-binding domain 418 462 IPR001005 -
Bpe12g00703 686 CDD SANT 577 620 IPR001005 -
Bpe12g00703 686 Gene3D - 415 464 - -
Bpe12g00703 686 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 570 624 IPR017930 -
Bpe12g00703 686 MobiDBLite consensus disorder prediction 1 24 - -
Bpe12g00703 686 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 522 569 IPR017930 -
Bpe12g00703 686 MobiDBLite consensus disorder prediction 665 686 - -
Bpe12g00703 686 CDD SANT 419 464 IPR001005 -
Bpe12g00703 686 CDD SANT 525 567 IPR001005 -
Bpe12g00703 686 Gene3D - 469 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00703 K09422 MYBP; transcription factor MYB, plant - qsu:112030773 784.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00703 Bpe15g00520 CCT
Bpe12g00703 Bpe13g00370 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00703 Bpe-Chr12:12573083 Bpe04g01326 Bpe-Chr4:19845724 1.65E-12 dispersed
Bpe12g00703 Bpe-Chr12:12573083 Bpe02g00177 Bpe-Chr2:1225647 4.52E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01310 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.2 0.0e+00 1146.3
Bpe09g00664 . 282 390 MYB-Related Transcription Factor Family AT1G09770 83.5 2.1e-43 174.5
Bpe12g00703 BCT,CCT 188 668 MYB-Related Transcription Factor Family AT3G18100 55.4 3.9e-149 525.4
Bpe12g00703 BCT,CCT 188 668 MYB-Related Transcription Factor Family AT3G18100 55.4 3.9e-149 525.4
Bpe11g01310 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.2 0.0e+00 1146.3
Bpe09g00664 . 282 390 MYB-Related Transcription Factor Family AT1G09770 83.5 2.1e-43 174.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22232 PF13921 Myb_DNA-bind_6 4.00E-12 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00703 Bpe_Chr12 FPKM 9.853461 12.116369 7.899881 7.800126 12.717803 11.902667 12.31086 31.044788 30.791595 30.70278