Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00704 ATGGCTTACGGGTCTATTTTGCAGGGCTGTTTCAGTTCCACCATGTCCATGTCTCTTAGACCCACTTCGCCCTTTCCGTTCCGCAGACCGCCTAAAGGTTTAGAACCTTTATTTCGCTACCTTACACTGAAGAACAGCCAACCACTAGGGTTAAGGAACTTCCATGCTCGCTCGCGTTTGACGCCGGGGGTATGGTGTTTGAGTTCTTCAAGAGAAATGGTAGAGTGGAAGGAAAAACAGCTGACTTTGGTTCGTTTGAGGCATAGAAGTGTTGCGTTTCCATTTTCGCAGTACCTTCAAAGCTCTAATTATGGGCGGTTTGCTTATCAAGATGCGTCCAGTGATGAATCGGATTACGAAATGGGGTCTCCTCAGCAACAAATGGGTGCATCAACCCTTGATAATATTGATGAATGGAGGTGGAAGTTAACTATGCTTCTTCGTAACACTGAGGAAAAAGAGATTGTTTCAAGGGAGAAGAAAGATAGACGGGATTTTGAGCATCTTTCAGCAATAGCAACAAGAATGGGTTTGCATAGTCGACAATATTCTAAAGTAGTAGCTTTTAGTAAAGATCCTCTTCCGAATTACCGGCCAGATTTGGATGATAAGCGGCCACAAAGAGAGGTGGTATTACCTTTTGGGCTTCAAAAAGATGTCGATGCTCATCTCAACTTATACCTTTCTAAAAAATCTATGTCTAAGAGTAGAGGAAGCTTTTCAGACGATCCTTGGTCCATGCATGGCATTGGTGGAAGTGCTGCTTCTAATAATGTGCAGCAGGAGCCATCAACTACAAATAATATATTCAGGGAGAAGTTTCTTCAACGCATAAGTTTGCAAATGCGAAATCAGCAACAGAACTGGCAGGATTCTCCCGAAGGCCAAAAGATGGATGAGTTTCGTAGAAGTCTCCCTGCATTCAAGGAGAAGGATATGCTGTTGAAAGCCATTGCAGAAAACCAGGTTGTTGTTGTCTCTGGTGAAACTGGCTGTGGCAAAACGACTCAACTTCCCCAATATATTCTAGAATCAGAAATTAATGCTGCCCGTGGAGCTTTGTGTAGCATAATTTGTACCCAGCCAAGGCGAATATCAGCTATGGCTGTATCTGAAAGAGTTGCTGCAGAGCGCGGAGAAAAACTGGGAGAATCTGTTGGTTACAAAGTTCGATTGGAAGGAATTAAAGGGAAGGACACCCGTCTTCTGTTTTGCACCACCGGTGTATTATTGAGGAGATTACTCGTTGACAGAAATTTAAAAGGTGTTACTCATGTTATTGTTGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTTCTGATTGTACTGAAGGATCTTCTACCTTGTCGACCCGAGTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCAGAGCTTTTCTCTTCTTATTTTGGTGGTGCTCCTAAAATCCATATTCCTGGTTTTACACATCCTGTGCGAGCCCACTTTTTGGAGAATATCCTGGAAATGACGGGCTATCGGTTGACGCCTTATAATCAAATTGACGACTATGGTCAAGAAAAGGTTTGGAAAATGCAGAAACAAACTCAATCTCTTAAAAGAAGGAAGAGCATGATAGCTTCTTCCATTGAGGATGCGCTAGAGACTGCTGATTTTAATGGATATAGCCCTCGTACTCGCGAGTCTCTATCCTGCTGGAATCCTGATTCCATTGGTTTTAACTTGATCGAACATACTCTTAGTTACATAGTCCAGAAAGAAAGGCCTGGTGCAATTTTGGTATTTATGACTGGTTGGGACGACATAAACTGTTTAAAGGATCAGCTCCAATCTCACCCCTTGTTGGGAGATCCTAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCTATGGCCAGCTCTGAGCAGAGGTTAATATTTGATAAGCCTGAAGATGGAATACGGAAAATAGTCCTAGCAACCAACATGGCTGAGACTAGTATCACCATCAATGATGTGGTTTTTGTAGTTGATTGTGGAAAAGCAAAGGAAACATCATATGATGCACTGAATAACACTCCTTGTTTGCTTCCATCTTGGATATCAAAGGCTGCAGCACGACAAAGAAAAGGAAGAGCTGGACGGGTTCAACCTGGTGAGGCTTTTCATCTGTACCCAAGATGTGTATATGATGCTTTTGCTGATTATCAATTACCAGAACTTTTGAGAACGCCATTACAGTCTTTGTGTTTGCAAATCAAAAGTTTGCAACTAGGAAGTATTTCAGAGTTTCTAGCAAAGGCATTGCAGTCACCTGAACCTTTATCGGTTCAAAATGCTGTTGAGTATTTGAAAACTATTGGAGCATTTGACGAGAAAGAGAATCTAACAGTGCTAGGTCGCCACTTATCAATGCTTCCAGTGGAACCTAAGCTTGGAAAAATGCTCGTGTATGGAGCTATTTTCAACTGTCTAGATCCAATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCTTTCCTAATGCCATTCGATAAGAAGGACCTTGCAGAGTCGGCAAAATCTCAATTTGCAGGTCGTGATTGTAGTGACCATATTGCTCTTGTGAGAGCTTATGAGGGTTGGAAAGATGCTGAAATGCGGCAATCTGGTTTTGAGTATTGTTGGAGAAATTTCCTTTCTGCTCAAACTCTAAAAGCCATAGATTCTTTGAGAAAACAGTTCTTTTTTTTGCTTAAGGATGCCGGTTTGATTGATAACACTTCTCAAAACTACAACATGTTGGGGCATGATGAACATCTAATCCGTGCAGTTGTCTGTGCGGGGCTTTTCCCGGGAATATGCTCCGTTGTGAACAAAGAGAAGTCAATAGCATTGAAAACGATGGAGGATGGTCAAGTTCTTTTATATTCTAGTTCTGTGAATTCATCGATACCCAAAATTCCATACCCGTGGCTCGTGTTTAACGATAAAGTGAAAGTAAATTCTGTTTTCCTTCGGGACTCTACTGGCGTGTCGGATTCTGTTCTACTTTTGTTTGGGGGCAACATTTCCAGTGGCGGACTAGATGGGCACCTTAAAATGCTGGAAGGATACTTGGAGTTTTTTATGAAACCTGATTTGGCTGAAACTTATTTGAGATTAAAAGGTGAGCTGGAGGAAATGATTCACATAAAGAGCATGCTCCTTGAAGAACTACAAATAACAAAGCAAAATCTTATAACTATTTGGAGTGACAACAAGACTGCGATCTCAATTTCACATAATACAATCCATTATGATAGAACAAAACATGTCAATATCGACCGACACTTTATCAAGGAGAAGATTGATGAAGGCATTCTTGAAATCTCCTATATACCTACCATACATCAAGTTGCAGACATTCTTATGAAGGTTCTTTTCAAACCCATGTTTGAACGACTAATAGACAAGCTTGGAATGTATAACATATACCATCCAACTTGA 3435 41.22 MAYGSILQGCFSSTMSMSLRPTSPFPFRRPPKGLEPLFRYLTLKNSQPLGLRNFHARSRLTPGVWCLSSSREMVEWKEKQLTLVRLRHRSVAFPFSQYLQSSNYGRFAYQDASSDESDYEMGSPQQQMGASTLDNIDEWRWKLTMLLRNTEEKEIVSREKKDRRDFEHLSAIATRMGLHSRQYSKVVAFSKDPLPNYRPDLDDKRPQREVVLPFGLQKDVDAHLNLYLSKKSMSKSRGSFSDDPWSMHGIGGSAASNNVQQEPSTTNNIFREKFLQRISLQMRNQQQNWQDSPEGQKMDEFRRSLPAFKEKDMLLKAIAENQVVVVSGETGCGKTTQLPQYILESEINAARGALCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGKDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPCRPELRLILMSATLNAELFSSYFGGAPKIHIPGFTHPVRAHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQTQSLKRRKSMIASSIEDALETADFNGYSPRTRESLSCWNPDSIGFNLIEHTLSYIVQKERPGAILVFMTGWDDINCLKDQLQSHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGEAFHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLAKALQSPEPLSVQNAVEYLKTIGAFDEKENLTVLGRHLSMLPVEPKLGKMLVYGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKSQFAGRDCSDHIALVRAYEGWKDAEMRQSGFEYCWRNFLSAQTLKAIDSLRKQFFFLLKDAGLIDNTSQNYNMLGHDEHLIRAVVCAGLFPGICSVVNKEKSIALKTMEDGQVLLYSSSVNSSIPKIPYPWLVFNDKVKVNSVFLRDSTGVSDSVLLLFGGNISSGGLDGHLKMLEGYLEFFMKPDLAETYLRLKGELEEMIHIKSMLLEELQITKQNLITIWSDNKTAISISHNTIHYDRTKHVNIDRHFIKEKIDEGILEISYIPTIHQVADILMKVLFKPMFERLIDKLGMYNIYHPT 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12591111 12609667 - Bpe005964.2 Bpe12g00704 112717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00704 1144 Pfam DEAD/DEAH box helicase 315 466 IPR011545 GO:0003676|GO:0005524
Bpe12g00704 1144 Gene3D - 565 723 IPR027417 -
Bpe12g00704 1144 Gene3D - 254 483 IPR027417 -
Bpe12g00704 1144 CDD SF2_C_RHA 551 713 - -
Bpe12g00704 1144 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 745 IPR001650 -
Bpe12g00704 1144 Pfam Helicase conserved C-terminal domain 573 704 IPR001650 -
Bpe12g00704 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 881 IPR027417 -
Bpe12g00704 1144 Pfam Helicase associated domain (HA2) 768 841 IPR007502 GO:0004386
Bpe12g00704 1144 SMART ha2_5 767 858 IPR007502 GO:0004386
Bpe12g00704 1144 PANTHER ATP-DEPENDENT RNA HELICASE 103 1050 - -
Bpe12g00704 1144 SMART helicmild6 599 705 IPR001650 -
Bpe12g00704 1144 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 103 1050 - -
Bpe12g00704 1144 SMART ultradead3 303 491 IPR014001 -
Bpe12g00704 1144 CDD DEXHc_RHA-like 321 481 - -
Bpe12g00704 1144 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 924 1006 IPR011709 -
Bpe12g00704 1144 Gene3D - 747 850 - -
Bpe12g00704 1144 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 482 IPR014001 -
Bpe12g00704 1144 CDD RNase_HI_RT_Ty1 1043 1123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00704 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 1610.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02012 Bpe-Chr2:21779817 Bpe12g00704 Bpe-Chr12:12591111 0 dispersed
Bpe03g01191 Bpe-Chr3:30809385 Bpe12g00704 Bpe-Chr12:12591111 0 dispersed
Bpe04g01937 Bpe-Chr4:24256282 Bpe12g00704 Bpe-Chr12:12591111 0 dispersed
Bpe12g00704 Bpe-Chr12:12591111 Bpe13g00528 Bpe-Chr13:12558610 2.21E-87 dispersed
Bpe12g00704 Bpe-Chr12:12591111 Bpe06g00591 Bpe-Chr6:16772216 5.14E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00704 Bpe_Chr12 FPKM 10.019784 14.554371 9.52386 8.62623 12.052135 15.70628 13.243663 3.581661 2.926937 2.493946