Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00705 ATGGAGGACGAGGAGCTAGACTATTTGCTTGTCCCACTGGGGCTGTTGCTAATGACGGCCTATCACATCTGGCTTACTTTCACTATATTTCGCCACCCTCAACGAACCGTCATCGGCGTCAATGCTGAATGTCGCCGGCGATGGGTTTTGTGCGTCATGACGGATCCATTGAAAAATGGAACTTTATCAGTCCAAACAATACGCAATAACATCAAGGCATCCACTCTTTTGGCCACTACAGCTCTCACTCTGAGTTCTCTAATTAGTGTTCTTCTAAGCAGCAAACCAAACTCTCTCAAGTACTTTTCTATTGTCCTGTGCTTTCTTGTTGCCTTTCTCTGCAATGTTCAGTCTATTCGATGTTATGCGCATGCGAGCTTCTTGGTGACACTTCCGACACGGAAACACAGACAATGCTCGATAGAATATGTTACCGAAACCTTAAATCGGGGTGGATTCTTTTGGTCGCTTGGATTACGAGCGTTTTACTTCTCGTTCCCTCTTTTTCTTTGGATTTTCGGGTCAATACCGATGTTTTCATGTTGCGTTTTAATGTCATTCATTCTCTACTTCTTGGATACGAATTCTAGCTTCGGACAAGACATCGATGATTGCAATGTCGTGGAACATACCAACCAATATTCGTAA 648 43.67 MEDEELDYLLVPLGLLLMTAYHIWLTFTIFRHPQRTVIGVNAECRRRWVLCVMTDPLKNGTLSVQTIRNNIKASTLLATTALTLSSLISVLLSSKPNSLKYFSIVLCFLVAFLCNVQSIRCYAHASFLVTLPTRKHRQCSIEYVTETLNRGGFFWSLGLRAFYFSFPLFLWIFGSIPMFSCCVLMSFILYFLDTNSSFGQDIDDCNVVEHTNQYS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12617908 12619133 + Bpe005965.1 Bpe12g00705 112718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00705 215 PANTHER OS01G0683700 PROTEIN 1 210 - -
Bpe12g00705 215 Pfam Protein of unknown function, DUF599 9 196 IPR006747 -
Bpe12g00705 215 PANTHER OS02G0292800 PROTEIN 1 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00705 - - - tcc:18604223 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00705 Bpe-Chr12:12617908 Bpe14g00538 Bpe-Chr14:4678287 2.74E-31 dispersed
Bpe12g00705 Bpe-Chr12:12617908 Bpe12g00706 Bpe-Chr12:12620248 3.89E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001251 3 5 2 2 2 2 5 1 2 1 1 2 3 3 3 3 1 3 2 1 3 3 3 3 2 1 3 4 4 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00705 Bpe_Chr12 FPKM 0.383259 0.628624 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0