Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00721 CTTGATCTTGTTTGCGTTGCAGTGAGGAAGTTGACAGTGTTGAGGAATCAGCGCTTCGCTTTTGGGAAATTTCATTTCTCTACCGCCGCAGAGCCATCATCCAGCCCCGGTAATCCTCCGAGGGTTCCGAATCTTATTGGTGGGAGATTTGTTGATTCCGAATCATCAGCATTCATCGATGTCGTTAACCCAGCAACGCAAGAAATTGTTTCTCAAGTTCCATTGACTACAACTGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGAAAGCTTTTCCATCATGGCGTAATACCCCAATTACAACCCGTCAACGAATAATGCTCAAACTCCAAGAGCTTATTCGAAAAAACATGGACAAGCTTGCCCAGAATATTACAACTGAACAGGGAAAAACATTGAAGGATGCACATGGAGATGTGTTTCGTGGGCTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACCCTACAAATGGGGGAGTATGTCTCCAACGTGTCTCATGGAATTGACACCTACAGCATTCGAGAGCCTTTAGGCGTGTGTGCTGGGATTTGTCCATTCAACTTTCCGGCAATGATTCCCTTATGGATGTTTCCAGTCGCAGTAACATGTGGGAATACCTTTGTTTTAAAGCCCTCTGAAAAGGATCCAGGGGCGTCTATAATTCTGGCCGAGTTGGCAAAAGAGGCTGGGTTACCTGATGGTGTCTTAAACATTGTGCACGGCACCAATGAGATTGTTAATGCCATTTGTGATGATGACAACATAAGAGCTGTTTCATTTGTGGGCTCTAATACTGCGGGAATGCACATTTATTCGAGAGCATCAGCTAAAGGAAAACGATCTAATATGGGGGCCAAGAATCACGCTATTGTAATGCCTGACGCAAGTATAGATGCTACTCTGAACTCTTTAGTCGCTGCTGGTTTTGGTGCTGCAGGACAAAGATGCATGGCACTTAGCACGGCTTTATTTGTTGGTGGCTCAGAGGCATGGGAGAAAAAACTTGTGGAACGAGCCAGTGCTTTGAAGGTAAACTCTGGAATGGAATCTGATGCCGATCTTGGTCCAGTAATTAGCAAACAGGCAAAAGAAAGAATCTGCAGATTAATTGAATCTGGTGTCCAAAGTGGAGCAAGGATGCTGCTTGACGGGAGAAGTATTGTGGTTCCTGGATATGAACATGGCAATTTCATAGGCCCTACTATCTTATCAGAGGTTGCAGAAAACATGGAGTGCTACAAAGAGGAGATTTTTGGCCCAGTTCTTCTTTGCATGCAGGCAGAAAGCCTAGACGAAGCCATAAGCATCGTCAACAGAAACAAGTATTTACTGCCTTTGTTCTTTTTTTTTTTTTTAAAAGTACCGTTAATTCTGTGTGATTATGGTGCAAAAGAAATATGTGATAGATATGGAAACGGAGCTGCAATATTCACTTCATCTGGTGTAGCTGCAAGGAAGTTCCAGACTGAGATTGAGGCTGGACAGGTCGGGATCAATGTTCCGATTCCAGTGCCATTGCCGTTTTTCTCGTTCACCGGCTCCAAATCATCTTTTGCTGGGGACCTCAACTTCTATGGCAAAGCTGGTGTTAATTTTTACACACAGATCAAAACAGTGACCCAACAATGGAAAGACCTGCCTGATGGAAGTGGAGTCAGCCTTGCAATGCCAACTTCTAGTTCTCAAAAATAG 1695 44.07 LDLVCVAVRKLTVLRNQRFAFGKFHFSTAAEPSSSPGNPPRVPNLIGGRFVDSESSAFIDVVNPATQEIVSQVPLTTTEEFKAAVSAAKKAFPSWRNTPITTRQRIMLKLQELIRKNMDKLAQNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIILAELAKEAGLPDGVLNIVHGTNEIVNAICDDDNIRAVSFVGSNTAGMHIYSRASAKGKRSNMGAKNHAIVMPDASIDATLNSLVAAGFGAAGQRCMALSTALFVGGSEAWEKKLVERASALKVNSGMESDADLGPVISKQAKERICRLIESGVQSGARMLLDGRSIVVPGYEHGNFIGPTILSEVAENMECYKEEIFGPVLLCMQAESLDEAISIVNRNKYLLPLFFFFFLKVPLILCDYGAKEICDRYGNGAAIFTSSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKSSFAGDLNFYGKAGVNFYTQIKTVTQQWKDLPDGSGVSLAMPTSSSQK 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12741865 12752069 + Bpe005982.1 Bpe12g00721 112734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00721 564 CDD ALDH_F6_MMSDH 42 544 IPR010061 GO:0004491
Bpe12g00721 564 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 310 321 IPR016160 GO:0016491
Bpe12g00721 564 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 31 443 - -
Bpe12g00721 564 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 469 562 - -
Bpe12g00721 564 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 31 443 IPR010061 GO:0004491
Bpe12g00721 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 507 539 IPR016162 GO:0016491
Bpe12g00721 564 Pfam Aldehyde dehydrogenase family 50 443 IPR015590 GO:0016491
Bpe12g00721 564 Pfam Aldehyde dehydrogenase family 470 540 IPR015590 GO:0016491
Bpe12g00721 564 SUPERFAMILY ALDH-like 40 546 IPR016161 GO:0016491
Bpe12g00721 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 470 506 IPR016163 GO:0016620
Bpe12g00721 564 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 469 562 IPR010061 GO:0004491
Bpe12g00721 564 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 443 IPR010061 GO:0004491
Bpe12g00721 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 284 IPR016162 GO:0016491
Bpe12g00721 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 285 445 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00721 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - cpap:110818933 883.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00721 Bpe-Chr12:12741865 Bpe07g00475 Bpe-Chr7:8120640 7.26E-58 dispersed
Bpe12g00721 Bpe-Chr12:12741865 Bpe01g00522 Bpe-Chr1:3381284 3.47E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00466 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.5 4.2e-217 750.7
Bpe01g00522 . 16 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.0 3.0e-215 744.6
Bpe02g02054 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 67.2 1.8e-183 639.0
Bpe13g01081 . 2 450 Aldehyde Dehydrogenase Gene Family AT3G24503 66.6 3.5e-179 624.8
Bpe11g01767 . 7 496 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 2.2e-157 552.4
Bpe12g00589 . 29 513 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.5e-155 545.0
Bpe13g01458 . 84 569 Aldehyde Dehydrogenase Gene Family AT3G24503 54.0 1.1e-153 540.0
Bpe13g00492 . 18 528 Aldehyde Dehydrogenase Gene Family AT3G24503 52.5 1.5e-153 539.7
Bpe12g00589 . 2 513 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 5.5e-247 850.1
Bpe13g01458 . 56 569 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 5.0e-240 827.0
Bpe13g00492 . 3 528 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 5.5e-239 823.5
Bpe11g01767 . 3 496 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 3.4e-233 804.3
Bpe08g00466 . 4 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.1 5.2e-165 577.8
Bpe01g00522 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.1 9.9e-164 573.5
Bpe02g02054 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.0 1.3e-147 520.0
Bpe13g01081 . 3 450 Aldehyde Dehydrogenase Gene Family AT3G48000 53.0 7.9e-145 510.8
Bpe13g00492 . 1 372 Aldehyde Dehydrogenase Gene Family AT1G23800 75.9 9.5e-167 583.2
Bpe11g01767 . 1 345 Aldehyde Dehydrogenase Gene Family AT1G23800 77.7 2.9e-163 571.6
Bpe12g00589 . 17 357 Aldehyde Dehydrogenase Gene Family AT1G23800 77.4 4.9e-163 570.9
Bpe13g01458 . 65 413 Aldehyde Dehydrogenase Gene Family AT1G23800 77.8 4.6e-161 564.3
Bpe01g00522 . 6 346 Aldehyde Dehydrogenase Gene Family AT1G23800 51.6 1.6e-102 369.8
Bpe08g00466 . 5 346 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 2.0e-100 362.8
Bpe02g02054 CCT 3 322 Aldehyde Dehydrogenase Gene Family AT1G23800 53.1 6.5e-91 331.3
Bpe13g01081 . 3 289 Aldehyde Dehydrogenase Gene Family AT1G23800 56.8 1.2e-89 327.0
Bpe13g00046 . 7 491 Aldehyde Dehydrogenase Gene Family AT4G34240 68.9 5.7e-196 680.6
Bpe04g00009 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 2.0e-177 619.0
Bpe04g00009 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 2.9e-179 624.8
Bpe13g00046 . 78 487 Aldehyde Dehydrogenase Gene Family AT1G44170 66.8 3.0e-160 561.6
Bpe01g00316 . 67 491 Aldehyde Dehydrogenase Gene Family AT1G44170 50.8 9.3e-117 417.2
Bpe13g00428 . 77 486 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 5.3e-112 401.4
Bpe13g00428 . 1 488 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 1.6e-184 642.5
Bpe01g00316 . 1 493 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 5.4e-161 564.3
Bpe07g00475 . 7 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.6 8.6e-237 816.2
Bpe07g00332 . 1 490 Aldehyde Dehydrogenase Gene Family AT1G79440 75.5 1.6e-222 768.8
Bpe05g00420 . 2 492 Aldehyde Dehydrogenase Gene Family AT1G79440 68.7 6.9e-194 673.7
Bpe12g00721 . 3 528 Aldehyde Dehydrogenase Gene Family AT2G14170 76.7 4.4e-229 790.8
Bpe12g00577 CCT 1 521 Aldehyde Dehydrogenase Gene Family AT1G74920 78.5 4.6e-248 853.6
Bpe07g00817 CCT 1 527 Aldehyde Dehydrogenase Gene Family AT1G74920 76.5 3.4e-243 837.4
Bpe12g00577 CCT 1 521 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 3.0e-247 850.9
Bpe07g00817 CCT 1 529 Aldehyde Dehydrogenase Gene Family AT3G48170 74.5 3.4e-243 837.4
Bpe13g01166 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.3 1.1e-262 902.1
Bpe13g00279 . 9 481 Aldehyde Dehydrogenase Gene Family AT5G62530 82.7 1.5e-244 842.0
Bpe04g01114 . 4 599 Aldehyde Dehydrogenase Gene Family AT3G66658 81.5 2.5e-293 1004.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00721 Bpe_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0