Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00743 TTTTCGTGTAAAATGTCGTTCCGAAGTATTGTCCAGGACATAAGAGATTGTACAGGGAATTTATCTAGGCGGAGGTTTGAGTTCAGGCTGACTTCTCATGGCAGAGGGAAGTCACACGGTCCATTGCACGATTTAGATAATCAGCAAAATGCGGTTCAGAGCAGTTGTTGGGCGACCCTACCACCTGAACTCCTGTACGATGTCATTCTTAGACTAGAAGAGAGTGAAAGCACTTGGCCTTCTCGAAAACATGTTGTGGCTTGTGCTGCAGTGTGCCATTCTTGGAGGGTGATGTGCAAAGAAATTGTTAAAAGTCCAGAATTTTGTGGGAAGCTTACATTTCCCGTCTCCCTGAAGCAGATTCAAGCAATCTCTTTTCCCTCTCTGAAACTGCAATTTGATGCGACCTTGTTGTCTTCATTCAGGTCAAACTTCCTCGGCACGAAATTCATCATATACGATACACAGCCTCCATATGCTTCGGCGCCCCTCCCTCCTTTGGGGAAAACAAGCAGAAGGTTCTATACCAAAAAGGTGTCTCCAAAAGTCCCAAGCGCACACTATGACATAGCCCATATAGCATACGAACTAAACGTGCTAGGCACACGTGGCCCTCGGAGAATGCACTGTGTGATGGATTCTATTCCGGCCTCAGCTCTTATTGCAGGAAATACGGTCCCTGGCCAACCAGAGCGCATTACACGATGCCTCGAAGATTCATTCCGAAGTATGTCATTCTCGAAATCTGTTCATCACTCGACTGAATTCAGTAGTGCAAGATTTTCTGAAATCAGAAGAATTGGTAGTGATGATGAGCATGTCGAAACGAGGCCCTTGGTTCTTAAAAATAAGCCCCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTGAATTTCCGAGGGCGTGTGACTGTGGCGTCTGTCAAGAATTTTCAGCTGATTGCTGCTTCACAGCCGGCTGGGGCAGCGATGCCATCCCAGCCATCTCCGCCCGAGCATGACAAGATAATTCTGCAGTTTGGTAAGGTGGGTAAAGACATGTTCACTATGGATTACTGCTATCCGCTCTCGGCTTTTCAGGCATTTGCAATCTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1131 46.77 FSCKMSFRSIVQDIRDCTGNLSRRRFEFRLTSHGRGKSHGPLHDLDNQQNAVQSSCWATLPPELLYDVILRLEESESTWPSRKHVVACAAVCHSWRVMCKEIVKSPEFCGKLTFPVSLKQIQAISFPSLKLQFDATLLSSFRSNFLGTKFIIYDTQPPYASAPLPPLGKTSRRFYTKKVSPKVPSAHYDIAHIAYELNVLGTRGPRRMHCVMDSIPASALIAGNTVPGQPERITRCLEDSFRSMSFSKSVHHSTEFSSARFSEIRRIGSDDEHVETRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAGAAMPSQPSPPEHDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACE 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12958388 12960697 + Bpe006006.2 Bpe12g00743 112756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00743 376 Pfam F-box domain 57 103 IPR001810 GO:0005515
Bpe12g00743 376 ProSitePatterns Tub family signature 1. 299 312 IPR018066 -
Bpe12g00743 376 PANTHER TUBBY-RELATED 136 376 - -
Bpe12g00743 376 PANTHER TUBBY-RELATED 5 120 - -
Bpe12g00743 376 Pfam Tub family 136 371 IPR000007 -
Bpe12g00743 376 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 5 120 - -
Bpe12g00743 376 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
Bpe12g00743 376 SUPERFAMILY Tubby C-terminal domain-like 135 376 IPR025659 -
Bpe12g00743 376 Gene3D Tubby Protein; Chain A 102 370 IPR025659 -
Bpe12g00743 376 ProSitePatterns Tub family signature 2. 361 376 IPR018066 -
Bpe12g00743 376 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 136 376 - -
Bpe12g00743 376 PRINTS Tubby superfamily signature 354 376 IPR000007 -
Bpe12g00743 376 PRINTS Tubby superfamily signature 281 298 IPR000007 -
Bpe12g00743 376 PRINTS Tubby superfamily signature 187 214 IPR000007 -
Bpe12g00743 376 PRINTS Tubby superfamily signature 333 352 IPR000007 -
Bpe12g00743 376 PRINTS Tubby superfamily signature 137 161 IPR000007 -
Bpe12g00743 376 PRINTS Tubby superfamily signature 299 315 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00261 Bpe-Chr9:1905374 Bpe12g00743 Bpe-Chr12:12958388 4.05E-75 dispersed
Bpe12g00743 Bpe-Chr12:12958388 Bpe07g00349 Bpe-Chr7:2736000 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22237 PF01167 Tub 9.90E-82 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00743 K19600 - zju:107406893 553.132